Mjur023004.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995235.1:6591588-6596782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.6 4.4e+02 2.0 0.9 7 21 274 288 274 289 0.88 2 18 1.8e-07 8.3e-06 26.3 2.0 1 23 464 486 464 486 0.99 3 18 4.1e-05 0.0019 18.9 6.0 1 23 492 514 492 514 0.99 4 18 4.2e-05 0.0019 18.9 4.1 1 23 520 542 520 542 0.98 5 18 0.00034 0.016 16.0 3.6 1 23 548 570 548 570 0.98 6 18 0.0012 0.054 14.3 1.7 1 23 576 598 576 598 0.98 7 18 3.9e-06 0.00018 22.1 0.8 1 23 604 626 604 626 0.98 8 18 7.3e-06 0.00034 21.3 1.1 1 23 632 654 632 654 0.98 9 18 0.00034 0.016 16.0 3.6 1 23 660 682 660 682 0.98 10 18 0.0012 0.054 14.3 1.7 1 23 688 710 688 710 0.98 11 18 3.9e-06 0.00018 22.1 0.8 1 23 716 738 716 738 0.98 12 18 7.9e-06 0.00036 21.2 1.3 1 23 744 766 744 766 0.98 13 18 0.00034 0.016 16.0 3.6 1 23 772 794 772 794 0.98 14 18 0.0012 0.054 14.3 1.7 1 23 800 822 800 822 0.98 15 18 1.1e-05 0.00052 20.7 0.8 1 23 828 850 828 850 0.98 16 18 7.3e-06 0.00034 21.3 1.1 1 23 856 878 856 878 0.98 17 18 1.1e-05 0.00052 20.7 0.8 1 23 884 906 884 906 0.98 18 18 7.3e-06 0.00034 21.3 1.1 1 23 912 934 912 934 0.98
Sequence Information
- Coding Sequence
- ATGCGGTGTTGTGTGCCTTTCTGCAAAAATACTTTGGCCAATGCATCACCATCAGAGGGAGAAGAGAAGGAGATTAGTTTTCATGGTTTCCCAAGTGAAGTGCATCTCCGCGCTGCTTGGCTCCGAGCCCTCGGCAAACAAGACAGTCTACCGGACTCTGCAGTGGTCTGCTCGCAGCATTTTCTAAATGATGACCTTTATGAAACAGAAAGTGGCTCAAGGCAAATTGGTGCTGGTGCTATTCCTTCAATGGTGCAGGTTTGCATGATATGCCTTGACACTGACAGTAAGCTGTTTCTAATGAAGAAATATAACTTGGATGAAGCATATGAAAAGTTAACTGGACATCCCTTGTGTGAGCAAGGAAACCTAAAACAAACACTTTGTGTGCAATGTGCTCAGAGATTACTAAACTTTAGCAGATTTAGAGACAAGAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTGAAAAACACAAATTAATAACAAAGCGACATATCAAAATGATAAGCCGCACAAAACACCAACTAGAGAGTAGTATGGGGTTGACAACGCTAGGACCCGACCACTGTGACTTATACATAGTAGAACACCCCTCGGAAGACGAACAAACTGAATTAGAGGAGACAGACCACCAAGTTCTAGTGAAAACTGAAGGAAGTGATGACTCTATGTCGGTTGATGAGGACTCAGAAGTGGTGAATGAAGATGACAATAATGCAGTAACTGTTGAAGATGAGTTTGCAACTTCTAATGAGGAAGACATATCTGACTATAGCATTATGTTGGAAGCAAAATCACTGGATGAAGCTCTTCACAAAGCTCTCAAGACGAAACATTCATACACGCGACATATGAGTGTAAAGCTCGAGAACGGTGATGGTGATGGTGAATGTGAGACGTCACAAGTATGCAAGCCTCATACAGCTGTGAGCTCTAGCTGCTCACACTCTTCACTCATCACTGAGAACAAGCAGGCAGACTCCAGCCCTTCTGCACATTCTGCCCAACCCTTTGTCGCTCCGCTGCCTGCGAGTCTAACGACAAGTAACGAAGTAAAAGTGTCCCCACCTGAAGTAGCCGATACAAACTTCAGATTAACAGATTGTTTTGTCAAACTGTATGATATTTTCTCCAAGAAAGTCGTACCTAGACAACACAGAAAGGCTGTTAGGTCTTGTGTCAGTCAGAACATTGTGTCCAAAGATATCAGTTATCAGGCAACAAGTAAGAATGAAGTCTCTACGACAGAATATGTTGAACCAGTCACTAATTATGTACAAGAAGTTGTATCGAAAACTGTACAAAGCAAAACTGATTGTTTAAAGAATGTCATTAATGTACAATGTTCATTACAAACTAGTTCACACACTGAGGATAGTCGGTTCAAATGTGATATTTGTCGAAAAGCGTTTAAACGAAAAAGTCTCTTAGTAAAACACATAAAGACTCACGCTGAAGTAACACAGTTCACTTGCAAGATTTGCCAGTACGATTGTAAGTATCCAAGCCATCTGAAGATACACATGCGAACTCACACTGGCGAAAAGCCATTTTCTTGCAAGTTATGCAATTACAAATGTGCACGAAATAGCAATCTAGTGAGGCACATGACAACCCACTCTGGTATAAAACCTTTCTCATGTCAGTTATGCAAATACAAATGTGCACGAAATAGCAGTCTAGTGGAGCACATGAAAACCCACTCTGGTATAAAACCTTTCTCGTGTCAATCATGCAACTACAAAAGTGCACAAAAGAGCCATCTAGTGGCGCACATGGGAACCCACACTGGTATAAAACCTTTCATGTGTAATTTATGCAATTACAAATCTTCAGACAATAGCAATCTAGTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCGTGTCAATTATGCAACTACAAAAGTGCACGAAAGAGCAATCTAGTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCATGTCAGTTATGCAAATACAAATGTGCACGAAATAGCAGTCTAGTGGAGCACATGAAAACCCACTCTGGTATAAAACCTTTCTCGTGTCAATCATGCAACTACAAAAGTGCACAAAAGAGCCATCTAGTGGCGCACATGGGAACCCACACTGGTATAAAACCTTTCATGTGTAATTTATGCAATTACAAATCTTCAGACAATAGCAATCTAGTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCGTGTCAATTATGCAACTACAAAAGTGCACGAAAGAGCAATCTATTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCATGTCAGTTATGCAAATACAAATGTGCACGAAATAGCAGTCTAGTGGAGCACATGAAAACCCACTCTGGTATAAAACCTTTCTCGTGTCAATCATGCAACTACAAAAGTGCACAAAAGAGCCATCTAGTGGCGCACATGGGAACCCACACTGGTATAAAACCTTTCATGTGTAATTTATGCAATTACAAATCTTCAGACAATAGCAGTCTAGTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCGTGTCAATTATGCAACTACAAAAGTGCACGAAAGAGCAATCTAGTGGCGCACATGAGAACCCACTCTGGTATAAAACCTTTCATGTGTAATTTATGCAATTACAAATCTTCAGACAATAGCAGTCTAGTGGCGCACATGAGAACCCACACTGGTATAAAACCTTTCTCGTGTCAATTATGCAACTACAAAAGTGCACGAAAGAGCAATCTAGTGGCGCACATGAGAACCCACTCTGGTATAAAACCTTTCTCGTGTAAGTTATACTTATGA
- Protein Sequence
- MRCCVPFCKNTLANASPSEGEEKEISFHGFPSEVHLRAAWLRALGKQDSLPDSAVVCSQHFLNDDLYETESGSRQIGAGAIPSMVQVCMICLDTDSKLFLMKKYNLDEAYEKLTGHPLCEQGNLKQTLCVQCAQRLLNFSRFRDKSLRARALMMDLVEKHKLITKRHIKMISRTKHQLESSMGLTTLGPDHCDLYIVEHPSEDEQTELEETDHQVLVKTEGSDDSMSVDEDSEVVNEDDNNAVTVEDEFATSNEEDISDYSIMLEAKSLDEALHKALKTKHSYTRHMSVKLENGDGDGECETSQVCKPHTAVSSSCSHSSLITENKQADSSPSAHSAQPFVAPLPASLTTSNEVKVSPPEVADTNFRLTDCFVKLYDIFSKKVVPRQHRKAVRSCVSQNIVSKDISYQATSKNEVSTTEYVEPVTNYVQEVVSKTVQSKTDCLKNVINVQCSLQTSSHTEDSRFKCDICRKAFKRKSLLVKHIKTHAEVTQFTCKICQYDCKYPSHLKIHMRTHTGEKPFSCKLCNYKCARNSNLVRHMTTHSGIKPFSCQLCKYKCARNSSLVEHMKTHSGIKPFSCQSCNYKSAQKSHLVAHMGTHTGIKPFMCNLCNYKSSDNSNLVAHMRTHTGIKPFSCQLCNYKSARKSNLVAHMRTHTGIKPFSCQLCKYKCARNSSLVEHMKTHSGIKPFSCQSCNYKSAQKSHLVAHMGTHTGIKPFMCNLCNYKSSDNSNLVAHMRTHTGIKPFSCQLCNYKSARKSNLLAHMRTHTGIKPFSCQLCKYKCARNSSLVEHMKTHSGIKPFSCQSCNYKSAQKSHLVAHMGTHTGIKPFMCNLCNYKSSDNSSLVAHMRTHTGIKPFSCQLCNYKSARKSNLVAHMRTHSGIKPFMCNLCNYKSSDNSSLVAHMRTHTGIKPFSCQLCNYKSARKSNLVAHMRTHSGIKPFSCKLYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -