Mjur011888.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995236.1:126477-136599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0005 0.023 15.5 4.2 2 23 23 44 22 44 0.97 2 23 3e-05 0.0014 19.3 1.8 1 23 50 72 50 72 0.98 3 23 9.9e-05 0.0046 17.7 6.6 1 23 78 100 78 100 0.97 4 23 0.00035 0.016 16.0 2.7 1 23 106 128 106 128 0.98 5 23 0.0022 0.1 13.5 7.1 1 23 134 156 134 156 0.98 6 23 2 91 4.2 0.3 1 13 162 174 162 178 0.84 7 23 0.23 11 7.1 6.6 1 23 278 300 278 300 0.97 8 23 0.00058 0.027 15.3 5.1 1 23 306 328 306 328 0.97 9 23 2.1e-05 0.00099 19.8 2.1 1 23 334 356 334 356 0.96 10 23 0.00059 0.027 15.3 0.7 1 23 362 384 362 384 0.99 11 23 8.6e-06 0.0004 21.1 1.9 1 23 390 412 390 412 0.99 12 23 0.00018 0.0084 16.9 2.6 1 23 418 440 418 440 0.99 13 23 1.2e-07 5.6e-06 26.9 1.9 1 23 446 468 446 468 0.98 14 23 4.3e-06 0.0002 22.0 3.6 1 23 474 496 474 496 0.99 15 23 0.027 1.2 10.0 1.4 1 23 531 553 531 553 0.97 16 23 5.5e-05 0.0026 18.5 4.1 1 23 559 581 559 581 0.98 17 23 2.8e-05 0.0013 19.4 4.4 1 23 587 609 587 609 0.98 18 23 0.0041 0.19 12.6 1.2 1 20 647 666 647 669 0.92 19 23 0.00013 0.0061 17.3 4.3 1 23 675 697 675 697 0.99 20 23 9.1e-06 0.00042 21.0 4.6 1 23 703 725 703 725 0.98 21 23 0.00011 0.0052 17.5 0.2 1 23 731 753 731 753 0.98 22 23 2.3e-05 0.0011 19.7 2.8 1 23 759 781 759 781 0.98 23 23 0.0068 0.31 11.9 1.9 1 23 800 822 800 822 0.97
Sequence Information
- Coding Sequence
- ATGGGCGCTCCTTTGCCGGAAGAACATGAGAACGAAGACGCGAGCGCAGCCGAAACAAAGAAACTTCACTGTACAGTATGCGACTACACTTGTAAATACAATAGCGTTCTTACCATTCACATGAGGACTCACACGGGTGAAAAACCATTCTCTTGTGTGGTGTGTCGGGCTACGTTCATGAGGAAGGGTAACCTGACGCATCACATGAGGATACACTCCGGGGAGAAACCTCACCCTTGTGACGTCTGTCACCTCAGCTTCAAGACTAAACAGCATCTGATCAACCACACGAGGACTCACACAGGGGAAAAACCGTACCACTGCACCGCGTGCCGCGCTCGGTTCGCGTACAAGGACAACTTAACAAACCACTTGAGGACGCACACTGGTGAGAAACCATACATCTGCGACCATTGTAACAAGGAACACAGACAAAAACACTCGTTAATAAGACATATAAGAACTCACACTGGTGAAAGACCCTACAAGTGTAACGTTTGCCAAGTGAAATTCGCTTTAAAAGCTAAGTTTGCACCTCGCGTCGATGACGTCACACTGACGCTTATGTACGGGATGCGAACCGTACTGCCGCGACATGACGACCGCGGGGAGGTGAGCGGGGAAGTGGGAGAGGCGCCGCATTCCAGCGAGGTGCAAACTTATAGACCAAGTTATATGTATAGAAGTTATTTTTTATTTTTTTTAAATTACGACGAGACGACATCTTTACGAGCAAATGCATTGAAAACATTTTTCGTTCCAGGCGTTCCCGTGACGTTCTCCCCTCCAGCCCCACCGCGGCGCGGGAGGGGGAAGAAGAAAAAGAAGGTCCACTGCTGCAACATCTGCGAATACACCTGCCAGTACAGGAGCGTGCTGATCGTGCACACGCGGACTCACACCGGAGAGAAACCCTTCGCGTGTGACGCGTGCCACTTGAAGTTCAAAACCACGAGCCATCTCAGGTCTCACATCAAAACACACACCGGGGTAAAACCGCACGCCTGTCGACTTTGCCCCGCCAAGTTCGTGCGCAGGAGCTACCTAACCAACCACATGAGGACTCACACCGGTGAGAAACCTTACACATGCGACATATGTCTCTCCAGGTTCCCCAAAAGAAACAGCTTAATCGACCACATGAAGACTCACACTGGTGAAAAACCGTATCCGTGTGATCTGTGCGAGCTTAGGTTTTCACAAAAATGCAACTTAAACGATCACATAAGGACTCACACGGGTGAGAAACCCTACGAATGTAATCTTTGTCACGCCAGATTTACAAAGAAGAATAGTTTGTCTGGTCACATGATGACTCACACTGGTGAAAAGCCGTTCATGTGTGACGTATGCAAGAGAGAATTTAGGCGGAAGAGTAATTTGATGGAGCACATGAGGACTCACACTGGTGAGAAACCATACTCGTGCGAATTGTGTCAGAGAATGTTCCGACACTCGAGTAAACTGACGGAGCATATACGGACTCACACTGGCGACAAGCCGTTCGTTTGCAGCGTTTGCCTTCTTGTCGCGAGGCAGTTCCAGCCGCCTCGAGGCAAGGCGAGCAAGAGGCACAAGAGTCCGCCGATACACCGCTGTGACTTGTGCGACTACACCAACCGACGGCCGTACAGGCTGCGCGTGCACATGCTCGCCCACTCCGGCGTGCGGCCCTTCTCCTGCCACCTCTGCAAATCCAAGTTCAGAACCGCGACCAACCTAAAGCTCCACATGAGGATACACACTGGTGACAAACCGTACTCGTGCGATCTATGCGAACGAAGATTTTCATATAAGTGCAACTTGAAGACGCACATGAGGGCTCACACAGGCCTTCTCGACGCGAGGCAGTTCCCGCCTAGTGGCAAACCTGATACGAGGCAGTTTCCGCCTCCCCCACCCAAACGCAAGAAGAGACAAAAGAACTCCATAACGTTACACAGCTGTGGCGTATGCGACTACACCTGTCGTCGTCGGAGTGGCTTGCTCGCGCACCTGCCCGTCCACTCCGACGCGAGGCCCTTCCGCTGCAGCACCTGCGACTCCAGGTTCAAGACCATGAGCACCTTAAAGTACCATATGAAGACCCATACAGGCGACAAGCCGTATGTATGCGAGCATTGCCCGCGCAAGTTCGCACGACGAAGCCATCTCACCTACCACTTGAACTCCCACTCGGGTGACAAGCCATACACTTGCAACCTTTGCCCCGTCAGCTACAAAGCCAGGGTCAGCCTGACCGCGCACATGAGACTCCACGCCGGCGAGGGGCTGTTCACGTGCGATATCTGCCACAAGGAGTACAAACGGAAGGACAGCATCAAAGCTCACATGAAGCTCCACGCGCAACACAAACCAGCTTCCTATAAACCCCAAGGCTCCAACGCTAAGACGCTGTTCTGCTGCGCCGTGTGTGATGTGAATTTCATGGAAATAAATCATCTGTCCGCTCACATGAGGACTCACCGTTGA
- Protein Sequence
- MGAPLPEEHENEDASAAETKKLHCTVCDYTCKYNSVLTIHMRTHTGEKPFSCVVCRATFMRKGNLTHHMRIHSGEKPHPCDVCHLSFKTKQHLINHTRTHTGEKPYHCTACRARFAYKDNLTNHLRTHTGEKPYICDHCNKEHRQKHSLIRHIRTHTGERPYKCNVCQVKFALKAKFAPRVDDVTLTLMYGMRTVLPRHDDRGEVSGEVGEAPHSSEVQTYRPSYMYRSYFLFFLNYDETTSLRANALKTFFVPGVPVTFSPPAPPRRGRGKKKKKVHCCNICEYTCQYRSVLIVHTRTHTGEKPFACDACHLKFKTTSHLRSHIKTHTGVKPHACRLCPAKFVRRSYLTNHMRTHTGEKPYTCDICLSRFPKRNSLIDHMKTHTGEKPYPCDLCELRFSQKCNLNDHIRTHTGEKPYECNLCHARFTKKNSLSGHMMTHTGEKPFMCDVCKREFRRKSNLMEHMRTHTGEKPYSCELCQRMFRHSSKLTEHIRTHTGDKPFVCSVCLLVARQFQPPRGKASKRHKSPPIHRCDLCDYTNRRPYRLRVHMLAHSGVRPFSCHLCKSKFRTATNLKLHMRIHTGDKPYSCDLCERRFSYKCNLKTHMRAHTGLLDARQFPPSGKPDTRQFPPPPPKRKKRQKNSITLHSCGVCDYTCRRRSGLLAHLPVHSDARPFRCSTCDSRFKTMSTLKYHMKTHTGDKPYVCEHCPRKFARRSHLTYHLNSHSGDKPYTCNLCPVSYKARVSLTAHMRLHAGEGLFTCDICHKEYKRKDSIKAHMKLHAQHKPASYKPQGSNAKTLFCCAVCDVNFMEINHLSAHMRTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -