Mjur002909.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995221.1:1667608-1680143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.009 0.41 11.6 2.1 1 23 166 188 166 188 0.98 2 22 3.1e-05 0.0014 19.3 5.4 1 23 379 401 379 401 0.98 3 22 7.5e-05 0.0034 18.1 2.3 1 23 407 429 407 429 0.96 4 22 0.013 0.61 11.0 4.3 1 23 435 457 435 457 0.96 5 22 1.6e-05 0.00072 20.2 2.7 1 23 463 485 463 485 0.99 6 22 1.6e-05 0.00075 20.2 2.2 1 23 491 513 491 513 0.95 7 22 7.7e-05 0.0036 18.1 3.2 1 23 519 541 519 541 0.98 8 22 0.00012 0.0055 17.5 1.0 1 22 547 568 547 568 0.92 9 22 7.1e-05 0.0033 18.2 3.3 1 23 575 597 575 597 0.98 10 22 0.0021 0.095 13.6 3.8 1 23 603 625 603 625 0.95 11 22 2.2e-05 0.001 19.7 4.5 1 23 631 653 631 653 0.98 12 22 0.00035 0.016 16.0 1.1 1 23 658 680 658 680 0.95 13 22 7.7e-05 0.0036 18.1 3.2 1 23 686 708 686 708 0.98 14 22 1.6e-05 0.00075 20.2 2.2 1 23 714 736 714 736 0.95 15 22 7.1e-05 0.0033 18.2 3.3 1 23 742 764 742 764 0.98 16 22 0.0021 0.095 13.6 3.8 1 23 770 792 770 792 0.95 17 22 3.1e-05 0.0014 19.3 5.4 1 23 939 961 939 961 0.98 18 22 3.1e-05 0.0014 19.3 5.4 1 23 1108 1130 1108 1130 0.98 19 22 7.5e-05 0.0034 18.1 2.3 1 23 1136 1158 1136 1158 0.96 20 22 0.00071 0.033 15.0 2.9 1 23 1164 1186 1164 1186 0.96 21 22 9e-05 0.0042 17.8 2.4 1 23 1192 1214 1192 1214 0.99 22 22 0.0036 0.17 12.8 4.1 1 23 1220 1242 1220 1242 0.95
Sequence Information
- Coding Sequence
- ATGATATGCCTAGACACTGACAGCAAGCTGTTACTAATGAGTTACGAATTGGAAGAAGCATATGAAAAGTTAATTGGACAGCCTTTGTGTGATCAAGGAAACCTAAAACATACAATCTGTGTACAATGTACTCAGAGATTGATAAATTTTAGTAGATTTAGAGACGAGAGCTTGAGAGCCCGTGCACTGATGATGGACTTAGTTCAAAAACATGAATTTATAACAAGACAACATATGAAACTGATAAACAGCATAAAACACAGACTAAATAGTAATATGACAAAGCTAGACCCTGACCACTGTGACTTACACATACTTGAACACCCCTCAGAAGACCATCAGAAAGAATTAGAGGAAACCAGATTGGAAAGTATCATGAAAATTGAAGGAAATGATGAGTCCATGATGGCTGATGAAGACTTGAAAATGGAGAATGAAGATGATAATAATGTCAGTGATTTCATTCTAGATCCGTTAAAGTATGAAAGTTCTCCCTACCAATGTACACTTTGTTGGGAGGAATTTGTACATGAACATGCGTACATGCAACATTTGAGCATGCATGTCCAGCAGCAAGGTGACGGTGATGGTGAATGGAAGACGTCACAAGTATGCAAGCCTCATACAGCTGTGAGCTGCAGTTCTGCATACTCTTCACTCATCACTGAGAACAAGCAGGCAGACCCCAACACTTCCGCACATTCCGTTCAGATCTTAGTTGCTCCTTTGTCCGCGAGACTTGCGACAGTTAATGAGGACAAAGAGTCTGCAAATGAAGCTACCGATGCAGTCCGGGAAAGTAATCCAGTATTTGAAATCAACACTGACGCATTCGACAGCCAAACACCCGATATTAGCTGCAAAAGGAACATAAACATTAGTGAATTAACAAATTGCGTAGTGAAATTGAATGACGTTTTCAAAGACCCTAAGAAATTTGTCAATCAGAACATTCTGTCTAAAGATATCAGTTATCATGCAACAAGTCAGCATCAAATCCCCACGACAGTAGACGTTGGACCAGTCATTAACACAGTTAAAGCTTTACAAAGTGAAACTGATTGTTTGAAGAATGTCAATAACACGCAATGTAATAATTCTTTAGAGAATAGTTCAAACGTTAAGGAAAGAGGGTTCATTTGCAATATTTGCGAGTACAAATGCAAATATCAAAGTTATTTGAAGAAGCACATGAGAACTCACACTGGTTTACAACCTTTCTTGTGTAAGTTATGCAATTACAGAAGTACAAGAAAAGGTAATCTACTGACGCACATGAGAACTCATACTGGTGAAAAGCCTTTCTTGTGTGAGTTATGCGATTTCAAATGTACAACAAATAGCCGTCTAATGTCGCACACAAGAACCCATACTGGTGTAAAACCTTATTCCTGTGAGTTATGTGATTACAGATGTACAGATAGTAATAGTCTAGTGAGGCACATGCGAACCCACACTGGTATCAAACCTTTCTTGTGCAACTTATGCAATTACAAATTTACAGACAAGAGCACTCTAGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATGTAATTTATGCGATTACAAATGTCCCAGAAATAGCTATCTAGTGAGGCACATGAGTACTCACACTGGTATAAAACCTTTCTTGTGCAACTTATGCAATTACAAATTTACAGACAAGAGCACTCTCGTGAAGCACATGACAACCCGCACTGGTGAAAAACCTTTCTCATGTAATTTATGCGATTACAAATGTGCCAGAAATAGCTATCTAGTGAGGCACATGAGTACTCACACTGGTATAAAACCTTTCTTGTGCAACTTATGCAATTACAAATGTTCAGAGAAGAGCTCTCTTGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATGTAAGTTATGCGATTACAAATGTGCCAGAAATAGCTATCTACTGAGGCACATGAGAACTCACACTGGTACACCTTTCTTGTGCAACTTATGCAATTACAAAAGTACAGACAAGAGCGCTCTTGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATGTAATTTATGCGATTACAAATGTCCCAGAAATAGCTATCTAGTGAGGCACATGAGTACTCACACTGGTATAAAACCTTTCTTGTGCAACTTATGCAATTACAAATTTACAGACAAGAGCACTCTCGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATGTAATTTATGCGATTACAAATGTGCCAGAAATAGCTATCTAGTGAGGCACATGAGTACTCACACTGGTATAAAACCTTTCTTGTGCAACTTATGCAATTACAAATGTTCAGAGAAGAGCTCTCTTGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATTCGCTCCTTTGTCCGCGAGACTTGCGACCGTTAATGAAGACAAAGAGTCTGCAAATGAAGCTATCGATGCAGTCCGGGAAAGTAATCCAGTATTTGAAATCAACAATGACGCATTCGACAGCCAAACACCCGATATTAGCTGCAAAAGGAACATAAACATTAGTAGATTAACAAATTGCGTAGTGAAATTGAATGACGTTTCCAAAGACCCTAAGAAATTTGTCAATCAGAACATTGTGTCTAAAGATATCAGTTATCATGCAACAAGTCAGCATGAAATCCCTACGACAGTAGACGTTGGACCAGTCATTAACACAGGTAAAGCTTTACAAAGTGAAACTGATTGTTTGAAGAATGTGAATAACACACAATGTAATAATTCTTTAGAGAATAGTTCAAACGTTGAGGAAAGAGGGTTCATTTGCAATATTTGCGAGTACAAATGCAAATATCAAAGTTATTTGAAGAAGCACATGAGAACTCACACTGTTTTACAACCTTTCTTGTTCGCTCCTTTGTCCGCGAGACTTGGGACCGTTAATGAAGACAAAGAGTCTGCAAATGAAGCTACCGATGCAGTCCGGGAAAGTAATCCAGTATTTGAAATCAACAATGACGCATTCGACAACCAAACACCCGATATTAGCTGCAAAAGGAACATAAACATTAATAGATTAACAAATTGCGTAGTGAAATTGTATGACGTTTTCAAAGACCCTAAGAAATTTGTCAATCAGAACATTGTGTCTAAAGATATCAGTTATCATGCAACAAGTCAGCATGAAATCCCTACGACAGTAGACGTTGGACCAGTCATTAACACAGTTAAAGCTTTACAAAGTGAAACTGATTGTTTGAAGAATGTCAATAACACGCAATGTAATAATTCTTTAGAGAATAGTTCAAACGTTGAGGAAAGAGGGTTCATTTGCAATATTTGCGAGTACAAATGCAAATATCAAAGTTATTTGAAGAAGCACATGAGAACTCACACTGGTTTACAACCTTTCTTGTGTAAGTTATGCAATTACAGAAGTACAAGAAAAGGTAATCTACTGACGCACATGAGAACCCATACTGGTGAAAAACCTTTCTTGTGTGAGTTATGCGATTACAAATGTACAACAAATAGCGGTCTAATGTCGCACACAAGAACCCATACTGGTGTAAAACCTTACTCCTGTGAGTTATGTGATTACAGATGTACAGGTAGTAATAGTCTAGTGAGGCACATGCGAACCCACACTGGTATCAAACCTTTCTTGTGCAACTTATGCAATTACAAATGTACAGAGAAGAGCACTCTAGTGAAGCACATGACAACCCACACTGGTGAAAAACCTTTCTCATGCTGTTCTGGTAAAAGACTGGTCGTGCCTAGTTGCCCCTCTGTCGGCAAAGCCGTGCCGCCAAGCGACGACGCTGTCCATCGCGATGCCGGGTGA
- Protein Sequence
- MICLDTDSKLLLMSYELEEAYEKLIGQPLCDQGNLKHTICVQCTQRLINFSRFRDESLRARALMMDLVQKHEFITRQHMKLINSIKHRLNSNMTKLDPDHCDLHILEHPSEDHQKELEETRLESIMKIEGNDESMMADEDLKMENEDDNNVSDFILDPLKYESSPYQCTLCWEEFVHEHAYMQHLSMHVQQQGDGDGEWKTSQVCKPHTAVSCSSAYSSLITENKQADPNTSAHSVQILVAPLSARLATVNEDKESANEATDAVRESNPVFEINTDAFDSQTPDISCKRNINISELTNCVVKLNDVFKDPKKFVNQNILSKDISYHATSQHQIPTTVDVGPVINTVKALQSETDCLKNVNNTQCNNSLENSSNVKERGFICNICEYKCKYQSYLKKHMRTHTGLQPFLCKLCNYRSTRKGNLLTHMRTHTGEKPFLCELCDFKCTTNSRLMSHTRTHTGVKPYSCELCDYRCTDSNSLVRHMRTHTGIKPFLCNLCNYKFTDKSTLVKHMTTHTGEKPFSCNLCDYKCPRNSYLVRHMSTHTGIKPFLCNLCNYKFTDKSTLVKHMTTRTGEKPFSCNLCDYKCARNSYLVRHMSTHTGIKPFLCNLCNYKCSEKSSLVKHMTTHTGEKPFSCKLCDYKCARNSYLLRHMRTHTGTPFLCNLCNYKSTDKSALVKHMTTHTGEKPFSCNLCDYKCPRNSYLVRHMSTHTGIKPFLCNLCNYKFTDKSTLVKHMTTHTGEKPFSCNLCDYKCARNSYLVRHMSTHTGIKPFLCNLCNYKCSEKSSLVKHMTTHTGEKPFSFAPLSARLATVNEDKESANEAIDAVRESNPVFEINNDAFDSQTPDISCKRNINISRLTNCVVKLNDVSKDPKKFVNQNIVSKDISYHATSQHEIPTTVDVGPVINTGKALQSETDCLKNVNNTQCNNSLENSSNVEERGFICNICEYKCKYQSYLKKHMRTHTVLQPFLFAPLSARLGTVNEDKESANEATDAVRESNPVFEINNDAFDNQTPDISCKRNININRLTNCVVKLYDVFKDPKKFVNQNIVSKDISYHATSQHEIPTTVDVGPVINTVKALQSETDCLKNVNNTQCNNSLENSSNVEERGFICNICEYKCKYQSYLKKHMRTHTGLQPFLCKLCNYRSTRKGNLLTHMRTHTGEKPFLCELCDYKCTTNSGLMSHTRTHTGVKPYSCELCDYRCTGSNSLVRHMRTHTGIKPFLCNLCNYKCTEKSTLVKHMTTHTGEKPFSCCSGKRLVVPSCPSVGKAVPPSDDAVHRDAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -