Mjur007212.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995233.1:1978293-1982724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1e-05 0.00048 20.8 0.4 1 23 354 376 354 376 0.98 2 20 0.0001 0.0048 17.7 4.0 1 23 410 432 410 432 0.98 3 20 0.00013 0.0058 17.4 5.9 1 23 438 460 438 460 0.98 4 20 3.4e-05 0.0016 19.2 5.5 1 23 466 488 466 488 0.98 5 20 8.6e-05 0.004 17.9 3.2 1 23 494 516 494 516 0.98 6 20 3e-05 0.0014 19.3 3.6 1 23 522 544 522 544 0.98 7 20 0.00023 0.011 16.6 5.9 1 23 550 572 550 572 0.98 8 20 3e-05 0.0014 19.3 3.6 1 23 578 600 578 600 0.98 9 20 8.9e-05 0.0041 17.9 6.0 1 23 606 628 606 628 0.98 10 20 4.1e-06 0.00019 22.0 4.6 1 23 634 656 634 656 0.98 11 20 0.00043 0.02 15.7 2.4 1 23 662 684 662 684 0.98 12 20 7.3e-05 0.0034 18.1 2.3 1 23 690 712 690 712 0.98 13 20 6.8e-05 0.0031 18.2 2.7 1 23 718 740 718 740 0.98 14 20 3e-05 0.0014 19.3 3.6 1 23 746 768 746 768 0.98 15 20 8.9e-05 0.0041 17.9 6.0 1 23 774 796 774 796 0.98 16 20 0.0065 0.3 12.0 0.8 8 23 809 824 802 824 0.89 17 20 0.00043 0.02 15.7 2.4 1 23 830 852 830 852 0.98 18 20 7.3e-05 0.0034 18.1 2.3 1 23 858 880 858 880 0.98 19 20 6.8e-05 0.0031 18.2 1.8 1 23 886 908 886 908 0.98 20 20 4.1e-06 0.00019 22.0 4.6 1 23 914 936 914 936 0.98
Sequence Information
- Coding Sequence
- ATGGCGAATTCAGGAAAATGGCAATGCGTGCGTGGTTTTGCAGAAGGGCACACCTTCTGCAAAACCACGGCGGAGGTCGTCTCGGAATCCGAGGAGATTACATTTCACGAGTTCCCCAGAGAAGTGCATCTCCGTGCTGCTTGGCTCAGAGCCCTCGGCAAACAAGACACTCTCCTGCCAGAGCCTGCTGTGGTCTGCTCGCAGCATTTTCTGAACGATGACATTTATGAAACAGAAAGTGGCTCAAGGCGGATTCGTACTGGTGCTGTCCCCTCACCAGTGCTGGTCTGCATGATATGCCTGGACACTCACAGCAAGCTGTTTCTGATGAGTAAATATCAGTTGGAAGAAGCATATGAACATTTAGTGGGACATCCTTTGTGTGGTCAAGGAAAGCTCAAACAAACGCTTTGTGTGCAATGTGCCCAGAGACTGGTGAACTTTAGCGCATTCAGAGACAAGAGCTTGAGAGCGCGCTCCCTGATGATGGAGCTACTTGACAGACATGAAGTGATAACTATACGACATGTCAAATTGATAAGCCGCGTAAAATACCAACTACAGTCCGACATTGTCTCGGCGGTGTCGGAGCCCGACTACTGCGATGTGTACATAGCACACTCCGACGCGGACGGACGGACAGAACTAGACGCGACTGCCGCAACTGACGAAGCAGTTGCAGTCAAACCGGAAGCCGAGCCAGCCGCCGCCCAAACAGAGTTATATCCTTTCAGCCACATGATTCCCAAGCCGGAGTCGTCGGAGGACTGCGAGCAAGCTTCGGTCGCTCCTTCGGTACTCGCGACCAATCACGGAAACGAAGAACATCCGACTGATACAGACGACGAGTTGGATATATTGTCTTTCGAAAATAATACAAACATTTTTGAATATTCAGGGAAATCCCAGGAGCCCTTACTAAAACTGAAGGAATCGTTGGCGAAAATAAGTGATAATATCAATTTGCGAACAGCGAGGCCAAATGTTCTTTTAAAAAACGAACACAATTCCCAGGATATATCCAGTACACAGTTAGGAAACTATACTGACCAGATACAGTATATCTGTGACGTGTGCCAAAAGATATTTCAACGGAAAAGTTCCTTAGTTACCCACATTAGGGCGCACACTTACGCAAACACTTTCTCATGTAAGTTAAGAGAGCGCAAATTCACTCAAAGTAGTTCGTCATCGAGCCCCAGGAGGACTCACACTGGCGATAAGCCTTTTGTGTGCGAGTTATGTAAATACAAATGTGCACGAAATGGTCATTTAGTGAATCACATGAGGACTCACACTGGTGAAAAACCTTTCGCTTGTAAGTTATGTAAATACAAATGTGCACAAAATAGCCATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGCAAGTTATGTAATTACAAATGTGCACGAAATAGTCATTTAGTGAATCACATGAGGACTCACACTGGCGATAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGTCACATGAGGACTCACACTGGCGATAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAGTTATAAATGTACAGTAAATAGTCATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAATAGTCATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACACAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGAAAATGGTAAGTTAGTTATTCATATGAGGACTCACACTGGCGATAAGCCTTTCGTTTGTAAGATGTGCAATTATAAATGTGCAGTAAACAGTAGTTTAGTGAAGCACATAAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAGTTATAAATGTCCAGAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTATGTAAGTTGTGCAATTATAAATGTACAGTAAACAGTAGTTTAGTGAGGCACATGAGGACTCACACTGGCGAAAAGCTTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGTAAATAGTCATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTACAATTATAAATGTACACAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAATTATAAATGTACAGAAAATGGTAAGTTAGTTATTCATATGAGGACTCACACTGGCGATAAGCCTTTCGTTTGTAAGATGTGCAATTATAAATGTGCAGTAAACAGTAGTTTAGTGAAGCACATAAGGACTCACACTGGCGAAAAGCCTTTCGTGTGTAAGTTGTGCAGTTATGAATGTCCAGAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCGAAAAGCCTTTCGTATGTAAGTTGTGCAATTATAAATGTACACAAAATAGTAATTTAGTGAAGCACATGAGGACTCACACTGGCTAA
- Protein Sequence
- MANSGKWQCVRGFAEGHTFCKTTAEVVSESEEITFHEFPREVHLRAAWLRALGKQDTLLPEPAVVCSQHFLNDDIYETESGSRRIRTGAVPSPVLVCMICLDTHSKLFLMSKYQLEEAYEHLVGHPLCGQGKLKQTLCVQCAQRLVNFSAFRDKSLRARSLMMELLDRHEVITIRHVKLISRVKYQLQSDIVSAVSEPDYCDVYIAHSDADGRTELDATAATDEAVAVKPEAEPAAAQTELYPFSHMIPKPESSEDCEQASVAPSVLATNHGNEEHPTDTDDELDILSFENNTNIFEYSGKSQEPLLKLKESLAKISDNINLRTARPNVLLKNEHNSQDISSTQLGNYTDQIQYICDVCQKIFQRKSSLVTHIRAHTYANTFSCKLRERKFTQSSSSSSPRRTHTGDKPFVCELCKYKCARNGHLVNHMRTHTGEKPFACKLCKYKCAQNSHLVKHMRTHTGEKPFVCKLCNYKCARNSHLVNHMRTHTGDKPFVCKLCNYKCTVNSSLVSHMRTHTGDKPFVCKLCNYKCTVNSSLVRHMRTHTGEKPFVCKLCSYKCTVNSHLVKHMRTHTGEKPFVCKLCNYKCTVNSSLVRHMRTHTGEKPFVCKLCNYKCTVNSHLVKHMRTHTGEKPFVCKLCNYKCTQNSNLVKHMRTHTGEKPFVCKLCNYKCTENGKLVIHMRTHTGDKPFVCKMCNYKCAVNSSLVKHIRTHTGEKPFVCKLCSYKCPENSNLVKHMRTHTGEKPFVCKLCNYKCTVNSSLVRHMRTHTGEKLFVCKLCNYKCTVNSHLVKHMRTHTGEKPFVCKLYNYKCTQNSNLVKHMRTHTGEKPFVCKLCNYKCTENGKLVIHMRTHTGDKPFVCKMCNYKCAVNSSLVKHIRTHTGEKPFVCKLCSYECPENSNLVKHMRTHTGEKPFVCKLCNYKCTQNSNLVKHMRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954850;
- 90% Identity
- iTF_00954850;
- 80% Identity
- -