Mjur022955.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995235.1:4823152-4833827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0019 0.087 13.7 0.9 2 23 243 265 242 265 0.93 2 21 0.062 2.9 8.9 3.5 1 23 413 435 413 435 0.97 3 21 6.2e-07 2.8e-05 24.7 1.0 1 23 441 463 441 463 0.98 4 21 0.76 35 5.5 0.2 8 23 476 491 475 491 0.91 5 21 6.2e-05 0.0029 18.4 4.9 1 23 497 519 497 519 0.98 6 21 3.2e-05 0.0015 19.2 3.3 1 23 525 547 525 547 0.98 7 21 0.00037 0.017 15.9 2.3 1 23 553 575 553 575 0.98 8 21 6.2e-05 0.0029 18.4 4.9 1 23 581 603 581 603 0.98 9 21 3.2e-05 0.0015 19.2 3.3 1 23 609 631 609 631 0.98 10 21 3.2e-05 0.0015 19.2 3.3 1 23 637 659 637 659 0.98 11 21 4.3e-05 0.002 18.8 2.7 1 23 665 687 665 687 0.98 12 21 7e-05 0.0032 18.2 2.5 1 23 693 715 693 715 0.98 13 21 5.7e-07 2.6e-05 24.8 3.6 1 23 721 743 721 743 0.98 14 21 2.9e-05 0.0013 19.4 3.5 1 23 749 771 749 771 0.98 15 21 0.00025 0.011 16.5 2.2 1 23 777 799 777 799 0.98 16 21 0.00018 0.0084 16.9 2.6 1 23 805 827 805 827 0.97 17 21 2.3e-05 0.0011 19.7 5.5 1 23 833 855 833 855 0.98 18 21 3.3e-05 0.0015 19.2 3.1 1 23 861 883 861 883 0.98 19 21 0.00011 0.0052 17.5 4.3 1 23 889 911 889 911 0.98 20 21 9.7e-07 4.5e-05 24.0 4.9 1 23 917 939 917 939 0.99 21 21 0.0026 0.12 13.3 2.7 1 23 945 967 945 967 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAGGAGCTGTGCGGCGAGAGGCGCCTCCACGCCGCCACAGTGCAGGTCTGTGTCCCAGCACTAATGCGTAGTGAAGTCGGAGCTTCTGGAGCTCTGTCCAAGCCCCTGCCACGCGCCGAGGCATTACAACTGTACACTGAACAACTCGATAGACCGAGCTGTGCTGACCGGGTTTGCATGACATGCCTGGACACTGACAGCCAAATGTTTTCAGTGAGCGAATGCAAGTTGGAACAAGCGTATGAGCACTTGACTGGTTATCCTTTGTTTGACGTAGGCAACCTACAACACTCACTTTGCGCTGAATGTGCTCAGAGATTGACAAACTTTGACAAATTCAGAGACAAGAGCTTGAGAGCTCGTGCGCTTATGATGGACTTGGTAAAACAACATGAAGTGATAACGAGACAGCACATCGCTGCATTGCACCCGCTGGACCACAGCACGCAGGCCTCTGTAGAGACGGCCTGGGACAGCGCAGACGTGGCCTCGGTGAAGACGGAGCCCGACCTGCGCGCGGACTGGGACAGCGCAGACGCGCAAGCCTCGGACAGCGAAGACGCGCAGGCCTCGGTGAAGTCCGAAGGCAGTGCCAGCATGCTGCGGGACGCCAAGCTGCTGGACGAGGCTCTGTGCAGAGTGCTGCTGACGAGAATGTCGCGTGTGGAAGAGCGCGCGCTGGCGACGCGGGATCTGCTGAAGTGCGAGAATGTGACGCTGCAGTGTACGGAGTGCGGCGAGGAGTTCTCCCGCGAGCGCGAGTACAACGAGCACGCGCACTCGAGACATCGCACGACTCGCGCGAGTGAAGGCTGCTCAGCTACCGTCGTATTGGCCGCGAGACTTGCGAACACTGACGACGAAAGAGAGCACCCTGACAATATTCAACAGGCTGAAGCAATCGACAAATGTGAACAAGTGTTTGGGATTGATAATGACGAAGCAGACAACAAACAGATCCAAAAATACAATGAGCCTACGCAGTGCATAAAATCACCATTAAACATTTGCAGTTTTTCTGATTTGGTCAGTAAAAATAATGATACTGACCCTGGTGAGGCAGAAAGCCAAGATGAACTCCCTATATCAGAAACCAATGAATCAGTCACCTCACATATTGTTACTGTAGACAAAGTTTCGTTGAACAATGACGGTGATGTGGGAAATATAGTAACAATGGAAACTACGGAACTTTCATATTCAGCAAAACATGTAGAGGAAACAAGCAACTATATATGTGACATTTGCCAACATAGGTTTAAATGTAAAAATCTCCTAGTGAAACACATTATGGCTCACAGTATAGAAGAACCGTTTGTTTGTGAGTTATGTCAGTACAAGTTTAGTCAGAACAGTGACTTAGTGCAGCACATGAGAACTCACACTGGTGACAAACCCTTTAGTTGTGAGTTGTCCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGACAATTCATATTGGTAATAAATCCTTTGTTTGTGAGTTGTGCCAATATAAATGTGCGCGGAAAAGTCATTTAGTGAGCCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGACAATTCATATTGGTAATAAATCCTTTGTTTGTGAGTTGTGCCAATATAAATGTGCGCGGAAAAGTCATTTAGTGAGCCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAACCATTTGTTTGTGAGTTGTGCCAATATAAATGTGTGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACGTGAGAATTCATACTGGTAATAAATCCTTTGATTGTGAGTTGTGCCAGTATAAATGTGTGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGCTTGTAAGGTATGCCATTATAAATGTGCACGGAATAGTAATTTAATGCAGCACATGAGAACACATACAGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGATTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAAACGTTTGTTTGTGAGTTGTGCCAATATAAATGTGTACGGAATAGTCATTTAGTGCTTCACATGAGAACACATACTGGGGAGAAACCATATGTTTGTAAGATATGCCATTATAAATTTGCGCAGAATAGTCATTTAGTGCAGCACATGAGAACTCACACTGGGGAGAAACGTTTTGCATGTGAGTTCTGCTCGTATAAATGTGCTGCTAAAAGTAGTTTATTGAAACACATGAGAAGTCACAGCCACAATTCATAA
- Protein Sequence
- MEQELCGERRLHAATVQVCVPALMRSEVGASGALSKPLPRAEALQLYTEQLDRPSCADRVCMTCLDTDSQMFSVSECKLEQAYEHLTGYPLFDVGNLQHSLCAECAQRLTNFDKFRDKSLRARALMMDLVKQHEVITRQHIAALHPLDHSTQASVETAWDSADVASVKTEPDLRADWDSADAQASDSEDAQASVKSEGSASMLRDAKLLDEALCRVLLTRMSRVEERALATRDLLKCENVTLQCTECGEEFSREREYNEHAHSRHRTTRASEGCSATVVLAARLANTDDEREHPDNIQQAEAIDKCEQVFGIDNDEADNKQIQKYNEPTQCIKSPLNICSFSDLVSKNNDTDPGEAESQDELPISETNESVTSHIVTVDKVSLNNDGDVGNIVTMETTELSYSAKHVEETSNYICDICQHRFKCKNLLVKHIMAHSIEEPFVCELCQYKFSQNSDLVQHMRTHTGDKPFSCELSQYKCSRKSALVQHMTIHIGNKSFVCELCQYKCARKSHLVSHMRTHTGDKPFSCELCQYKCSTKSALVQHMRTHTGDKPFSCELCQYKCSTKSALVQHMTIHIGNKSFVCELCQYKCARKSHLVSHMRTHTGDKPFSCELCQYKCSTKSALVQHMRTHTGDKPFSCELCQYKCSTKSALVQHMRTHTGDKPFSCELCQYKCSRKSALVQHMRIHTGEKPFVCELCQYKCVQNSTLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSRKSALVQHMRTHTGDKPFSCELCQYKCSRKSALVQHVRIHTGNKSFDCELCQYKCVQNSTLVQHMRTHTGEKPFACKVCHYKCARNSNLMQHMRTHTGDKPFSCELCQYKCSRKSDLVQHMRIHTGEKTFVCELCQYKCVRNSHLVLHMRTHTGEKPYVCKICHYKFAQNSHLVQHMRTHTGEKRFACEFCSYKCAAKSSLLKHMRSHSHNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -