Mjur023218.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995235.1:4850818-4864444[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0023 0.11 13.4 0.9 2 23 201 223 200 223 0.93 2 24 0.026 1.2 10.1 1.9 1 23 370 392 370 392 0.97 3 24 7.6e-07 3.5e-05 24.4 1.0 1 23 398 420 398 420 0.98 4 24 5.4e-05 0.0025 18.6 2.7 1 23 426 448 426 448 0.98 5 24 8.7e-05 0.004 17.9 2.5 1 23 454 476 454 476 0.98 6 24 5.4e-05 0.0025 18.6 2.7 1 23 482 504 482 504 0.98 7 24 8.7e-05 0.004 17.9 2.5 1 23 510 532 510 532 0.98 8 24 7e-07 3.2e-05 24.5 3.6 1 23 538 560 538 560 0.98 9 24 2.8e-05 0.0013 19.5 4.0 1 23 566 588 566 588 0.98 10 24 0.00031 0.014 16.2 2.2 1 23 594 616 594 616 0.98 11 24 0.00022 0.01 16.6 2.6 1 23 622 644 622 644 0.97 12 24 8.7e-05 0.004 17.9 2.5 1 23 650 672 650 672 0.98 13 24 5.4e-05 0.0025 18.6 2.7 1 23 678 700 678 700 0.98 14 24 8.7e-05 0.004 17.9 2.5 1 23 706 728 706 728 0.98 15 24 7e-07 3.2e-05 24.5 3.6 1 23 734 756 734 756 0.98 16 24 2.8e-05 0.0013 19.5 4.0 1 23 762 784 762 784 0.98 17 24 0.00031 0.014 16.2 2.2 1 23 790 812 790 812 0.98 18 24 0.00028 0.013 16.3 3.6 1 23 980 1002 980 1002 0.97 19 24 0.016 0.72 10.8 7.0 1 23 1008 1030 1008 1030 0.99 20 24 2.4e-05 0.0011 19.6 3.6 1 23 1036 1058 1036 1058 0.98 21 24 0.0016 0.076 13.9 4.7 1 23 1064 1086 1064 1086 0.98 22 24 1.2e-06 5.4e-05 23.8 3.2 1 23 1092 1114 1092 1114 0.98 23 24 0.005 0.23 12.3 1.6 1 23 1120 1142 1120 1142 0.97 24 24 0.049 2.3 9.2 2.8 1 23 1148 1170 1148 1170 0.97
Sequence Information
- Coding Sequence
- ATGGAGCAGGAGCTGTGCGGCGAGAGGCGCCTCCACGCCGCCACAGTGCAGGTTTGCATGACATGCCTGGACACTGACAGCCAAATGTTTTCAGTGAGCGAATGCAAGTTGGAACAAGCGTATGAGCACTTGACTGGTTATCCTTTGTTTGACGTAGGCAACCTACAACACTCACTTTGCGCTGAATGTGCTCAGAGATTGACAAACTTTGACAAATTCAGAGACAAGAGCTTGAGAGCTCGTGCGCTTATGATGGACTTGGTAAAACAACATGAAGTGATAACGAGACAGCACATCGCTGCATTGCACCCGCTGGACCACAGCATGCAGGCCTCTGTAGAGACGGCCTGGGACAGCGCAGACGTGGCCTCGGTGAAGACGGAGCCCGACCTGCGCGCGGACTGGGACAGCGCAGACGCGCAAGCCTCGGACAGCGAAGACGCGCAGGCCTCGGTGAAGTGCGAAGGCAGTGCCAGCATGCTGCGGGACGCCAAGCTGCTGGACGAGGCTCTGTGCAGAGTGCTGCTGACGAGAATGTCGCGTGTGGAAGAGCGCGCGCTGGCGACGCGGGATCTGCTGAAGTGCGAGAATGTGACGCTGCAGTGTACGGAGTGCGGCGAGGAGTTCTCCCGCGAGCGCGAGTACAACGAGCACGCGCACTCGAGACATCGCACGACTCGCGCGAGTGAAGGCTGCTCAGCTACCGTCGTATTGGCCGCGAGACTTGCGAGCACTGACGACGAAAGAGAGCACCCTGACAATACCGAACAGGCTGAAGCAATCGACAAATGTGAACAAGTGTTTGGGATTGATAATGACGAAGCAGACAAACCGAGCCAAAAATACAATGAGCCTACGCAGTGCATAAAATCACCATTAAACATTTGCAGTTTTTCTGATTTGGTCAGTAAAAATAACGATACTGACCCTGGTGAGACAGAAAGCCAAGATGAACTCCCTATATCAGAAACCAATGAATCAGTCACCTCACATATTGTTACTGTAGACAAAGTTTCGTTGAACAATGACGGTGATGTGGGAAATATAGTAACAATAGAAACTACGGAACTTTCATATTCAGCAAAACATGTAGAGGAAACAAGCAACTATATATGTGACGTTTGCCAATATAGGTTTAAATGTAAAAATCTCCTAGTGAAACACATTATGGCTCACAGTATAGAAGAACCGTTTGTTTGTGAGTTATGTCAGTACAAGTTTAGTCAGAACAGTGACTTAGTGCAGCACATGAGAACTCACACTGGTGACAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAACCATTTGTTTGTGAGTTGTGCCAGTATAAATGTGTGCAGAATAGTACTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAACCATTTGTTTGTGAGTTGTGCCAGTATAAATGTGTGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCTTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGATTTAGTGCAGCACATGAGAACACATACAGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACGTGAGAATTCATACTGGTAATAAATCCTTTGATTGTGAGTTGTGCCAGTATAAATGTGTGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTGAGTTGTGCCAATATAAATGTGTGCAGAATAGTACTTTAGTGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAACCATTTGTTTGTGAGTTGTGCCAGTATAAATGTGTGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCTTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGATTTAGTGCAGCACATGAGAACACATACAGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTAGAAAATCAGCTTTAGTGCAGCACGTGAGAATTCATACTGGTAATAAATCCTTTGATTTCGCTCTTCTGCCGGGCACACTCGCGCTTCATACTGAAAACAATGTACACCATGACGAGACTGAACAAGACGAAACAATTGACAAATGTGAACAAGAGGTTGAGATTGGCGACGAAGTAGACAACACTGATACAAACGACAAAGGATGCATAAACATGCCAAACATTTGCTTAGAGACAACTTGTGATGCTCTGAGAAAACCTGAGAGAGAACTAGACGAAGCGCTCACTACAACAAGGAAACTTATTTGTCTTTCTAACTCCAACGCTCAAAATAATGAAATCAACTCTGAAGGTTTCGAATATCAGACTAAAAGCGAAGATGAACTCCCTATATCAGAAACCATTGCAGCAGTCACCTCGCATGTTATTACTGTAGACAAAGTTTCTTTGAATAATGACAGTGATGAGGGAAATATCGTAACAATGGAAAATATGGCACTTTCATATTCAGGAAAACATATCGAGGAAACAAGTAGCTATATATGTAACGTTTGCCAACATAAGTTCAATCATAAAAATAATTTAGTGAAACACATTATGGCTCACAGTAAAGAAAAATCATTTACTTGCAAGTTGTGCCAATACAAATGTAGACAGACGTGTGATTTAGTGGAACACATGAGAACTCACACTGTTGAAAAACCTTTTGTTTGTAAGCTATGCCGTTATAAATGTGCGTCGAATAGTAATTTAGTGAGACACATGAGAACTCACACTGTTGAAAAACTATTTGTTTGTAAGCTATGCCATTACATAACTGCGCATAGTACTAATTTCGTGCAGCATATGAGAACACACACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCGCAGAATAGTAATTTAGTGCAGCACATGAGAACACATACTGGTGAGAAACCATTTGCTTGTAAACTATGCCCTTACAAAAGTGCACGGAATTGTAATTTAGTGCAGCACGTGAGAAGTCATACTGGGGAGAAACCTTTTGCATGTGATTTCTGTTCGTATAAATGTGCTATTAACAGTCGTTTATTGAAACACATGAGAAGTCACACTCATAATTCATAA
- Protein Sequence
- MEQELCGERRLHAATVQVCMTCLDTDSQMFSVSECKLEQAYEHLTGYPLFDVGNLQHSLCAECAQRLTNFDKFRDKSLRARALMMDLVKQHEVITRQHIAALHPLDHSMQASVETAWDSADVASVKTEPDLRADWDSADAQASDSEDAQASVKCEGSASMLRDAKLLDEALCRVLLTRMSRVEERALATRDLLKCENVTLQCTECGEEFSREREYNEHAHSRHRTTRASEGCSATVVLAARLASTDDEREHPDNTEQAEAIDKCEQVFGIDNDEADKPSQKYNEPTQCIKSPLNICSFSDLVSKNNDTDPGETESQDELPISETNESVTSHIVTVDKVSLNNDGDVGNIVTIETTELSYSAKHVEETSNYICDVCQYRFKCKNLLVKHIMAHSIEEPFVCELCQYKFSQNSDLVQHMRTHTGDKPFSCELCQYKCSRKSALVQHMRIHTGEKPFVCELCQYKCVQNSTLVQHMRTHTGDKPFSCELCQYKCSRKSALVQHMRIHTGEKPFVCELCQYKCVQNSTLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSRKSDLVQHMRTHTGDKPFSCELCQYKCSRKSALVQHVRIHTGNKSFDCELCQYKCVQNSTLVQHMRTHTGEKPFVCELCQYKCVQNSTLVQHMRTHTGDKPFSCELCQYKCSRKSALVQHMRIHTGEKPFVCELCQYKCVQNSTLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSRKSDLVQHMRTHTGDKPFSCELCQYKCSRKSALVQHVRIHTGNKSFDFALLPGTLALHTENNVHHDETEQDETIDKCEQEVEIGDEVDNTDTNDKGCINMPNICLETTCDALRKPERELDEALTTTRKLICLSNSNAQNNEINSEGFEYQTKSEDELPISETIAAVTSHVITVDKVSLNNDSDEGNIVTMENMALSYSGKHIEETSSYICNVCQHKFNHKNNLVKHIMAHSKEKSFTCKLCQYKCRQTCDLVEHMRTHTVEKPFVCKLCRYKCASNSNLVRHMRTHTVEKLFVCKLCHYITAHSTNFVQHMRTHTGEKPFVCKLCHYKFAQNSNLVQHMRTHTGEKPFACKLCPYKSARNCNLVQHVRSHTGEKPFACDFCSYKCAINSRLLKHMRSHTHNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -