Mjur023044.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995235.1:4763549-4771677[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0022 0.1 13.5 0.9 2 23 261 283 260 283 0.93 2 24 0.13 6.1 7.9 3.5 1 23 458 480 458 480 0.97 3 24 7.3e-07 3.4e-05 24.4 1.0 1 23 486 508 486 508 0.98 4 24 4.8e-07 2.2e-05 25.0 3.3 1 23 514 536 514 536 0.98 5 24 1.1e-06 5.1e-05 23.9 3.2 1 23 542 564 542 564 0.98 6 24 6.7e-07 3.1e-05 24.5 3.6 1 23 570 592 570 592 0.98 7 24 5.8e-05 0.0027 18.5 2.5 1 23 598 620 598 620 0.98 8 24 0.0004 0.018 15.8 3.0 1 23 626 648 626 648 0.98 9 24 6.7e-07 3.1e-05 24.5 3.6 1 23 654 676 654 676 0.98 10 24 5.8e-05 0.0027 18.5 2.5 1 23 682 704 682 704 0.98 11 24 0.0004 0.018 15.8 3.0 1 23 710 732 710 732 0.98 12 24 6.7e-07 3.1e-05 24.5 3.6 1 23 738 760 738 760 0.98 13 24 5.8e-05 0.0027 18.5 2.5 1 23 766 788 766 788 0.98 14 24 0.00013 0.0062 17.3 3.7 1 23 794 816 794 816 0.98 15 24 8.9e-07 4.1e-05 24.2 3.7 1 23 822 844 822 844 0.98 16 24 5.8e-05 0.0027 18.5 2.5 1 23 850 872 850 872 0.98 17 24 0.00013 0.0061 17.3 4.3 1 23 878 900 878 900 0.98 18 24 1.4e-05 0.00063 20.4 4.8 1 23 906 928 906 928 0.99 19 24 7.9e-05 0.0036 18.0 3.2 3 23 980 1000 979 1000 0.98 20 24 3.9e-05 0.0018 19.0 5.9 1 23 1006 1028 1006 1028 0.98 21 24 8.9e-05 0.0041 17.9 3.7 1 23 1034 1056 1034 1056 0.98 22 24 6.9 3.2e+02 2.5 0.3 14 23 1058 1067 1057 1067 0.91 23 24 6.2e-05 0.0029 18.3 5.6 1 23 1073 1095 1073 1095 0.98 24 24 0.00069 0.032 15.1 5.6 1 23 1101 1123 1101 1123 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAGGAGCTGTGCGGCGAGAGGCGCCTCCACGCCGCCACAGTGCAGGTCTGTGTCCCAGCACTAATGCGTAGTGAAGTCGGAGCTTCTGGAGCTCTGTCCGAGCCCCTGCCACGCGCCGAGGCATTACAACTGTACACTGAACAACTCGATAGACCGAGCTGTGCTGACCGGGTTTGCATGACATGCCTGGACACTGACAGCCAAATGTTTTCAGTGAGCGAATGCAAGTTGGAACAAGCGTATGAGCACTTGACTGGTTATCCTTTGTTTGACGTAGGCAACCTACAACACTCACTTTGCGCTGAATGTGCTCAGAGATTGACAAACTTTGACAAATTCAGAGACAGGAGCTTGAGAGCTCGTGCGCTGATGATGGACTTGGTGAAACAACATGAAGTGATAACGAGACAGCACATCGCTGCATTGCGCCCGCTGGACCACAGCATGCAGGCCTCTGTAGAGACGGCCTGGGACAGCGCAGACGTGGCCTCGGTGAAGACGGAGCCCGACCTGTGCACGGACTGGGACAGCGCAGACGTGGCCTCGGTGAAGACGGAGCCCGACCTGCGCGCGGACTGGGACAGCGCAGACGCGCAAGCCTCGGACAGCGAAGACGCGCAGGCCTCGGTGAAGTCCGAAGGCAGTGCCAGCATGCTGCGGGACGCCAAGCTGCTGGACGAGGCTCTGTGCAGAGTGCTGCTGACGAGAATGTCGCGTGTGGAAGAGCGCGCGCTGGCGACGCGGGATCTGCTGAAGTGCGAGAATGTGACGCTGCAGTGTACGGAGTGCGGCGAGGAGTTCTCCCGCGAGCGCGAGTACAACGAGCACGCGCACTCGAGACATCGCACGGTGAGCCCCCTAGCACTCTTGAGCCGCGTACTGGCACTCTTGAGCCGCGTACTGCCACTCTTGAGCCGCATACTGGCACTCTTGGGCCGCGTACTGGCACTCTTCTTTCTCTTTGACGTATTGGCCGCGAGACTTGCGAGCACTGACGACGAAAGAGAGCACCCTGACAATACCGAACAGGCTGAAGCAATCGACAAATGTGAACAAGTGTTTGGGATTGATAATGACGAAGCAGACAAACCGAGCCAAAAATACAATGAGCCTACGCAGTGCATAAAATCACCATTAAACATTTGCAGTTTTTCTGATTTGGTCAGTAAAAATAACGATACTGACTCTGGTGAGACAGAAAGCCAAGATGAACTCCCTATATCAGAAACCAATGAATCAGTCACCTCACATATTATTACTGTAGACAAAGTTTCTTTGAACAATGACAATGATGTGGGAAATATAGTAACAATGGAAACTACGGAACTTTCATATTCAGCAAAACATGTAGAGGAAACAAGCAACTATATATGTGACGTTTGCCAACATAGGTTTAAATGTAAAAATCTCCTAGTGAAACACATTATGGCTCACAGTATAGAAGAACCGTTTGTTTGTGAGTTATGTCAGTACAAATTTAGTCAGAACAGTGACTTAGTGCAGCACATGAGAACTCACACTGGTGACAAACCCTTTGTTTGTAATCTATGCCATTATAAATTTGCAAGGAAAAGTGATTTAGTGAGACACATGAGAACTCATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGCAGCACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGCCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTAAAAAATCTTTTGTTTGTGAGTTGTGCCAGTATAAATGTATGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTAATAAATCTTTTGTTTGTGAGTTGTGCCAGTATAAATGTATGCAGAATAGTACTTTAGTGCAACACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAGTGAAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTAATAAATCCTTTGTTTGTGAGTTGTGCCAGTATAAATGTGCACAGAATAGTCATTTAGTGCTGCACATGAGAACACATACTGGTGAAAAACCATTTGTTTGTAAGCTATGTCATTATAAATTTGCACAGAATAGTAATTTAATGCAGCACATGAGAACACATACTGGAGATAAACCCTTTAGTTGTGAGTTGTGCCAGTACAAATGTAGTACAAAATCAGCTTTAGTGCAGCACATGAGAATTCATACTGGTGAAAAACCGTTTGTTTGTGAGTTGTGCCAATATAAATGTGTACGGAATAGTCATTTAGTGCTGCACATGAGAACACATACTGGGAAGAAACCATATGTTTGTAAGTTATGCCATCATAAATTTGCGCAGAATAGTTCTTTAGTGCAGCACATGAGAACTCACACTGGGGAGAAACCTTTTGCATTCGCTCTTGTGCCCGCGAGACTTGCGACCCATGACGACAACGACACGCGCCGTGACGAGACTGAACAGGATGAAACTATACACGAATGTGAACAAGTGTTTGACATCGACGATACCGAAGCAGAAGCTGCTTGTGAGCTATGTCACTATACATGTACAGATAATAGTGATTTAGTGCAGCACATGAGAACACATACTGGGGAGAAACCCTTTGTTTGTAAGCTATGCCATTATAAATGTGCAAGGAAAAGTGATTTAGTGAAACACATGAGAACTCACACTGGTGAAAAACCCTTTGTTTGCAAATTGTGCCACAGTACATTTACGCTGAAAGGTAATTTGATGCAGCACATGAGAAAACATACAGGTAATTTAGTGCAGCACATGAGAAAACATACCGGTGAGAAACCCTTTAGTTGCAAGTTGTGCCAATATAAATGTAGTCGGAACTATGAATTACTGAGGCACATGAGAACACATTCTGGTGAAAAAGCCTTTGCTTGTAAGTTATGCCACTGTAAGTTAACGGAGAAAAGTAATTTAGTGCGGCACATGAGAACACATTCTGGTTAA
- Protein Sequence
- MEQELCGERRLHAATVQVCVPALMRSEVGASGALSEPLPRAEALQLYTEQLDRPSCADRVCMTCLDTDSQMFSVSECKLEQAYEHLTGYPLFDVGNLQHSLCAECAQRLTNFDKFRDRSLRARALMMDLVKQHEVITRQHIAALRPLDHSMQASVETAWDSADVASVKTEPDLCTDWDSADVASVKTEPDLRADWDSADAQASDSEDAQASVKSEGSASMLRDAKLLDEALCRVLLTRMSRVEERALATRDLLKCENVTLQCTECGEEFSREREYNEHAHSRHRTVSPLALLSRVLALLSRVLPLLSRILALLGRVLALFFLFDVLAARLASTDDEREHPDNTEQAEAIDKCEQVFGIDNDEADKPSQKYNEPTQCIKSPLNICSFSDLVSKNNDTDSGETESQDELPISETNESVTSHIITVDKVSLNNDNDVGNIVTMETTELSYSAKHVEETSNYICDVCQHRFKCKNLLVKHIMAHSIEEPFVCELCQYKFSQNSDLVQHMRTHTGDKPFVCNLCHYKFARKSDLVRHMRTHTGEKPFVCKLCHYKFAQNSNLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSTKSALVQHMRIHTGKKSFVCELCQYKCMQNSTLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSTKSALVQHMRIHTGNKSFVCELCQYKCMQNSTLVQHMRTHTGEKPFVCKLCHYKFAQNSNLVKHMRTHTGDKPFSCELCQYKCSTKSALVQHMRIHTGNKSFVCELCQYKCAQNSHLVLHMRTHTGEKPFVCKLCHYKFAQNSNLMQHMRTHTGDKPFSCELCQYKCSTKSALVQHMRIHTGEKPFVCELCQYKCVRNSHLVLHMRTHTGKKPYVCKLCHHKFAQNSSLVQHMRTHTGEKPFAFALVPARLATHDDNDTRRDETEQDETIHECEQVFDIDDTEAEAACELCHYTCTDNSDLVQHMRTHTGEKPFVCKLCHYKCARKSDLVKHMRTHTGEKPFVCKLCHSTFTLKGNLMQHMRKHTGNLVQHMRKHTGEKPFSCKLCQYKCSRNYELLRHMRTHSGEKAFACKLCHCKLTEKSNLVRHMRTHSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -