Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.8e-10 1.2e-07 31.7 0.0 1 36 155 190 155 195 0.92

2 4 4.9e-08 1.6e-05 24.9 0.1 9 32 196 219 193 219 0.96

3 4 3.3e-05 0.01 15.9 0.1 9 35 262 288 257 292 0.82

4 4 0.13 42 4.3 0.2 9 19 293 303 286 304 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.8e-10	1.2e-07	31.7	0.0	1	36	155	190	155	195	0.92
2	4	4.9e-08	1.6e-05	24.9	0.1	9	32	196	219	193	219	0.96
3	4	3.3e-05	0.01	15.9	0.1	9	35	262	288	257	292	0.82
4	4	0.13	42	4.3	0.2	9	19	293	303	286	304	0.75

Coding Sequence: ATGGGCAAGATTAAAATTAAAAAGTCTGGCCAAAGCCAGCAGTGTCGATGCTGTTTAAAGGAGATCGGCCTCAAGGAACTTTGGACAGAGTACTACAACGGGGAAGAGCGAGAGGTGTACGGTGAAATGGTGAACGATTGCTTCGCGTTGCCATGGGAGCCTCTGTTTGGCAAGACGGAGCATATCTGTGACAGCTGCATCACCCGGCTCCGCGATGCAGTCAGCTTCAAGCGAGAGATACTCTACTCTAACCAGTTGCTCAACCAAGAAGCCAAAAATGAGTCCAAACTCAGTGTGAAGCAAGAGGAAGAGTCAGACTTAGAGATGGAGACAGAGTACCTCAGCATTGAGTTCATGGATGACGAGGACAAGAATCTTATGGAAATCAAAATAGAACAAGAAAGCAAGTCAGAGATGACCGTCAAAGAAGAATCTTCACCGTCCAAGCGTGGCAAACGGTACACTGAGGACGACCTGAAGAAGTGTATGGAAGCTGTGATGAGCGGGAAGATGTCGCAGACCAAAGCATCTATCGTGTACCACGTGCCGAGGAAGACCATCAGCGCTGCGGTTGCAACGTTAGGTGTAGAAGCCGTGATGAGCGGCAAGATGTCGCAGACCAAAGCATCTATTGTATACCACGTGCCGAGAAAGACTCAGTGCTACGGTTGCAAACCAAAGCATCTATTGTATACCACTTGCCGAGAAAAACTATCAGTGCTGCGGTTGCAAGTGAGTTCACTTTCACTTTTCACTTTTATGTGTAAGACCATAGCGTTAGGTGTAGAAGCCATGAAAATTGGCAAGATGTCGCAGACCAAAGCATCTATTGTATACCACTTGCCGAGAAAGACTATCAGTGCTGCGGTTGCAAGTGTAGAGGCCGTGAAGAGCGGCAAGATGTCGCAGACCACGTGTCGTACACCACATGCCGAAGAAGGGCACCTGTGCTGCGGTCGCAAGTGA
Protein Sequence: MGKIKIKKSGQSQQCRCCLKEIGLKELWTEYYNGEEREVYGEMVNDCFALPWEPLFGKTEHICDSCITRLRDAVSFKREILYSNQLLNQEAKNESKLSVKQEEESDLEMETEYLSIEFMDDEDKNLMEIKIEQESKSEMTVKEESSPSKRGKRYTEDDLKKCMEAVMSGKMSQTKASIVYHVPRKTISAAVATLGVEAVMSGKMSQTKASIVYHVPRKTQCYGCKPKHLLYTTCREKLSVLRLQVSSLSLFTFMCKTIALGVEAMKIGKMSQTKASIVYHLPRKTISAAVASVEAVKSGKMSQTTCRTPHAEEGHLCCGRK

Sequence clustering based on sequence similarity using MMseqs2