Basic Information

Gene Symbol
GATA-B
Assembly
GCA_902806685.1
Location
NC:81289-106427[+]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.8e-17 3.3e-14 51.7 3.9 1 34 251 283 251 285 0.97
2 9 1.6e-17 2.9e-14 51.9 5.5 1 34 427 459 427 461 0.98
3 9 1.6e-17 2.9e-14 51.9 5.5 1 34 468 500 468 502 0.98
4 9 1.6e-17 2.9e-14 51.9 5.5 1 34 526 558 526 560 0.98
5 9 1.6e-17 2.9e-14 51.9 5.5 1 34 584 616 584 618 0.98
6 9 1.6e-17 2.9e-14 51.9 5.5 1 34 642 674 642 676 0.98
7 9 1.6e-17 2.9e-14 51.9 5.5 1 34 700 732 700 734 0.98
8 9 2.7e-17 4.9e-14 51.2 6.8 1 34 758 790 758 792 0.98
9 9 1.6e-17 2.9e-14 51.9 5.5 1 34 806 838 806 840 0.98

Sequence Information

Coding Sequence
ATGGCGGGTCGAACTGCGGCAGTGGCTCGTAATGTATGCAAGCGGCCCGAGGGCGTCGCGACGCGTTGGCTGAGCGCTCCACTTGCGCCGGCGCCGCTGCACCGTATCAGAGAACTGCTGCTGAAGCTATCCAGGCCATGCAAGGTGTACACTATCGCCTGTAAACTTGCAGCGCTTCACCCGCGCTGCGGCCGCGCcggcggcggcggcggcgcggcggtgtaCGCGCGCTGCGCCTACCCGGCGGCGCCCTCGCCGTACTTCGGCACCGGCGTGGAGCTCGCGCAGACGCAGATCTGGACCTGCTCCTCCAGCGCGGGCGGCTCCCCCAGCTACGCgccggcgggcggcggcggcgcgctgGGCGACGAGTTCGAGGGCAGCGAGGCGGGCgaggcggcgggcggcggcgcgctgCCGGCCTTCAGCGCGCGCTTCGGCGGAAGTATGGAACATAGAAGGAGGGAGAAGGACAAACCTGCCCGCCTCCGCCAGCCTCTCAGCATTACCGTGCGCGTGCGCCTGACCCCGCGCACAACGCGCCGCGAGCACGAACCGGCGCGCAGCACGCGCGGCCTTGCGCCCACTGCCAAGGCCGCGGGTCCGGCGCCGGACAAAGAACCTAACGGTGGTTCGTTCGGAGCTACGTCGGCACTGTACCACGTGTGCAGTTCCGACGTAGGGCTGTGTCGCGTGCGAGCTCGTGTGTCTGTGGCAGTCGAGGCGGAGCTGTTCACGGAGGGGCGCGAGTGCGTCAACTGCGGCGCCATCCACACGCCGCTGTGGCGCCGCGACGGCACCGGCCACTACCTGTGCAACGCGTGCGGCCTCTACAACAAAATGAACGGCATGAACCGCCCGCTCAAGCAGCCGCGGCGGCTGGTACGTCAGCGCCACGCCGCGCACGCCCCGCCCGCGCCCGACGTACGCACCGCTCGCTCTACCCTCGCCCCCCGCCCCCCGCCCCTCGCCCGCACCCGCACCCGCACCCCCGCCCTGGCCGCGGAGGGGGCCCCGCCGGGCGCGGATTTCTACAAGGGCTTCCTGTATAACGGCGTCGCCGCGCACGCGCACcacgcgcccgcgcccgcgctcgGCGCCCACGCCGCGCACCACGCGAGCCCCGACTACGCCAAGCAGAAAAAAGGGAAGCTGTCTCCCTCGATGGTATCTTCATATCATTGTAAGCTTGTCCGCTTGCCGCCCGCGCCCTGCAGCGTGGCCGCGTGTAACGTGTCGTGTCTGCAGCAGATGGGCGCGAAGCGGCCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGTCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGAGGGCCCGCACTTGCGACAGGTCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGAGGGCCCGCCTGTGCGACAGGTCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGAGGGCCCGCACTTGCGACAGGTCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGAGGGCCCGCACTGTGCGACAGGTCGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGAGGGCCCGCACTTGCGACAGGTCGGGCGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACCGCAGGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGGTGCTGTGCAGCAACTGCCAGACGGGCACCACGTCGCTGTGGCGCCGCAACGCGCAGGGCGAGAACGTGTGCAACGCGTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGCCCGCTCGCCATGAAGAAGGACGCGATACAGACAAGAAAGCGGAAACCCAAGAACGCAACGAACTTGAAGAATAAAGTGAACAACATCAAAATGGAATTGGAGTCCGTGAAGGCGAACACGTCGGCGGTGCGCTCGCCGCTCACGTTCGGCTACTACGTGCAGCAGCACtcgcagcagcagcagcagcagcagcagcagcagcagcagcaacagcaacagcagcagcagcagctgTCGGTGAAGCTGGAGGAGCCGCCGCCGGCGCACGCGCACCAGCTGTCGCACAGCCAGCCCTACTACGCGGAGGAGTACAGGCGCGCGGAGCCCGCCGAGCGCCTGGAGCGGCCCACCGTCGTGTCGCTGGGCAGCTGA
Protein Sequence
MAGRTAAVARNVCKRPEGVATRWLSAPLAPAPLHRIRELLLKLSRPCKVYTIACKLAALHPRCGRAGGGGGAAVYARCAYPAAPSPYFGTGVELAQTQIWTCSSSAGGSPSYAPAGGGGALGDEFEGSEAGEAAGGGALPAFSARFGGSMEHRRREKDKPARLRQPLSITVRVRLTPRTTRREHEPARSTRGLAPTAKAAGPAPDKEPNGGSFGATSALYHVCSSDVGLCRVRARVSVAVEAELFTEGRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRHAAHAPPAPDVRTARSTLAPRPPPLARTRTRTPALAAEGAPPGADFYKGFLYNGVAAHAHHAPAPALGAHAAHHASPDYAKQKKGKLSPSMVSSYHCKLVRLPPAPCSVAACNVSCLQQMGAKRPGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPSGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQVRARTCDRSGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQVRARLCDRSGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQVRARTCDRSGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQVRARTVRQVGVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQVRARTCDRSGVLCSNCQTGTTSLWRRNRRGENVCNACGLYYKLHGINRPLAMKKDAIQVLCSNCQTGTTSLWRRNAQGENVCNACGLYYKLHGINRPLAMKKDAIQTRKRKPKNATNLKNKVNNIKMELESVKANTSAVRSPLTFGYYVQQHSQQQQQQQQQQQQQQQQQQQQLSVKLEEPPPAHAHQLSHSQPYYAEEYRRAEPAERLERPTVVSLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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