Basic Information

Insect: Maniola hyperantus
Gene Symbol: ush
Assembly: GCA_902806685.1
Location: NC:2190852-2320554[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.01 0.4 10.8 0.2 1 20 142 161 142 163 0.93

2 9 8.9e-05 0.0034 17.3 0.9 1 23 200 222 200 222 0.98

3 9 1.9 74 3.6 1.0 3 20 253 270 252 272 0.89

4 9 0.044 1.7 8.8 4.2 2 21 512 531 511 532 0.95

5 9 0.0083 0.32 11.1 0.1 3 20 561 578 559 580 0.91

6 9 1.1 41 4.5 0.1 2 23 608 629 607 629 0.94

7 9 0.0087 0.34 11.0 1.3 1 23 635 657 635 657 0.99

8 9 0.3 11 6.2 1.0 1 23 694 717 694 717 0.96

9 9 0.92 35 4.7 0.9 3 20 750 767 749 769 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.01	0.4	10.8	0.2	1	20	142	161	142	163	0.93
2	9	8.9e-05	0.0034	17.3	0.9	1	23	200	222	200	222	0.98
3	9	1.9	74	3.6	1.0	3	20	253	270	252	272	0.89
4	9	0.044	1.7	8.8	4.2	2	21	512	531	511	532	0.95
5	9	0.0083	0.32	11.1	0.1	3	20	561	578	559	580	0.91
6	9	1.1	41	4.5	0.1	2	23	608	629	607	629	0.94
7	9	0.0087	0.34	11.0	1.3	1	23	635	657	635	657	0.99
8	9	0.3	11	6.2	1.0	1	23	694	717	694	717	0.96
9	9	0.92	35	4.7	0.9	3	20	750	767	749	769	0.93

Sequence Information

Coding Sequence: ATGTTATTGTGGTTGAGTTATTTGAGGCAGTTGGAGCTAGCCTGCGCCGGTGCGGCCGCCCTGCCGCCAGGCGGCGCTGTCGGCGGGAAAACAATGTgTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGTCAGGAGAACCTCGCACGCCGAGCTCTGGTGGGGAGCGCGTCGCCTCCAGTGGTGGGGCATCGCCGGTTTCTGAGGGTTCTACTGCTGCTTCTCCGCCACGATTACGGCTCAACACGAGTCTGGCGACTGATCCGGCTCTCGCACCGCAAGCTACATCTCTGAAACACGAGCCGCCCTCTCCATCACCCCCTCCGCCACCGGTTCAACAACCGAGAGATTACTTGGCTGGGCTCACGGCTGCAAACTTTCCAGCCTTGTTTCCCGTAGCGGCCACAACACCCCCAGGATATATGTGCCAACCTTGCGGAATACGGTATTCTTCACTAAGTACTCTTCAAGCACACCAAGAACACTACTGTTCCAAACGGAGAACAAAACCTGATGGCACGGAGACGTCTGCAGATGCTGCAGCTGATGAGTCGAGCGGAGACTCCAAAACGCCGCGGCCTTTAGGCAAACAATACGCATGCACCTATTGCTCATATAGCGCTGACAAAAAAGTTAGTTTAAATCGTCACATGCGAATGCATTCTTCATCCCCTGTTAGCAGTAGTACTCCTGTACTACCTCCCACCTCTAATGGAGAAGCTGTGGAAGGTCAGCCAGCACAGGACCGATATTGTATAGACTGTGACATACATTTCACGTCAATTAAAACTTTCCGGGCCCATAAAGCGCATTACTGCAATACGCGGCAAGTCGTAAAACAAGCATTGGCTGCAGCTAGAGCGGGTTCGGCGACATCAGGGTCGGCGCCACCATCTCCTGGTGCGACTCCGCCTGCACAAAATCAATATGCTTTGGCGCTACCGACAAATCCGATTCTTATAGTCCCATACTCGATATTAAGAAGCGCCAGTACGCTACCTGGTACTACTTTGCCAGACCCTGATACACCGTGCTTTTTATTACCAAATGGCACATTCCAGCCCCTTAGTAGAGCGTTaccaaatttaaatacaaatgaaGTAAAGGAGCCCGAAGTTTTAAAGTCAGCGAATAGACCGCGTGAGCAATCTCGTGATGGCACTACGCCATTAGATCTGAGCGTGCGACGTTCTCCGGAATCTGTAACGCCAGACGAACATGAAAAGGAGAATAGAATTCGTTCTACAACCCCTGAGCAAATTGTTTGCGCTCCATCGTTACCTGGCTCTCCCGGAACCCCATCTCCTTCAAGGCGATCTTCCTCTCCAAGTGGGGAAAGCTCTCCTAAACGAAGTCGACGTAGTTCAAGAGGGCCGACACCTAAACCGCCGAGCATACCTTCGCCTCCTGAAGAAAAATTTCCTCCAGTCGTGCCTGCGCCAATCTTACCACCCGGTTTGGCGTTAAGACTTGCCACAGACTTACCTGTAACCGTACCACCCCAAGTACTGGTTAAGCAAGGTGTTTCGAAGTGTAAAGAGTGCAATATAGTGTTTTGCAAATTCGAAAACTATCGGATACACAAACGGCATTACTGTTCAGCTGGCGGTGGGGAAGAGAGAGCTAGCCCTGCGCCTCCGGAGCCTGGTCCGCCGCCGCAATACCGACAGCTCATTTGCCTGGCGTGCGGGATACATTTCAGTTCGCTGGATAATTTGACAACTCATCAGGTCTATTACTGCACGAAGAGGGAGACTCGGTCACCGCGCAGCGTGCCTGAGACGCCGAGGCCAGCGTCTGGTTCTGACGGTGGATGGAAATGCCCGTGCTGCGACGTGGTGTCGCCGACGGCCGCAACTGCACAGAGGCATATGGAAGCTCACGCTGGGGTGAAGGCGTTTCGTTGCACGATCTGTCGGTACAGGGGGAACACGCTGCGGGGCATGCGCACTCACATACGCATGCACTTCCGGGAAAAGCCTGCTGACCTACAGGAGGAGAGCTACATCTCATGCGTAGTCGAGGAAGAAAGTCGCGAGACGACATCCCCAGCCCCAGCAGTGGGCGAGAGAGTGCATCGATGCAGTTCCTGCGCTTACACCTCCACGTACCGAGGCAACGTGGTACGACACGCGCGATTAGTCCACGCAACCGAGGAACCAGAATCCGAAGACACGACCTCCCCAATCCCAACAGTGGACATAAAAAAGGAGCCAGACACAGAGGAAGATTCCCCAAACTTCTGCAAGTTCTGTAACATACCTTTTAAATACGGTAACTCTTATAAAGCTCATAAGCAATTCTATTGCAAAGCTAACCAGGAGGCTGCGGCTAACAATAACGTGCCGGCAAGAGTCAATGATGCGTCGGTCGTATGA
Protein Sequence: MLLWLSYLRQLELACAGAAALPPGGAVGGKTMCEDEEWGNESEAMSGEPRTPSSGGERVASSGGASPVSEGSTAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPPPPVQQPRDYLAGLTAANFPALFPVAATTPPGYMCQPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTETSADAAADESSGDSKTPRPLGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSSTPVLPPTSNGEAVEGQPAQDRYCIDCDIHFTSIKTFRAHKAHYCNTRQVVKQALAAARAGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSILRSASTLPGTTLPDPDTPCFLLPNGTFQPLSRALPNLNTNEVKEPEVLKSANRPREQSRDGTTPLDLSVRRSPESVTPDEHEKENRIRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRSRRSSRGPTPKPPSIPSPPEEKFPPVVPAPILPPGLALRLATDLPVTVPPQVLVKQGVSKCKECNIVFCKFENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQVYYCTKRETRSPRSVPETPRPASGSDGGWKCPCCDVVSPTAATAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPADLQEESYISCVVEEESRETTSPAPAVGERVHRCSSCAYTSTYRGNVVRHARLVHATEEPESEDTTSPIPTVDIKKEPDTEEDSPNFCKFCNIPFKYGNSYKAHKQFYCKANQEAAANNNVPARVNDASVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01151650;
80% Identity: -