Basic Information

Insect: Maniola hyperantus
Gene Symbol: -
Assembly: GCA_902806685.1
Location: NC:14919581-14923423[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.8e-05 0.00069 19.5 0.3 1 23 156 178 156 178 0.98

2 7 0.001 0.039 14.0 1.0 1 23 184 206 184 206 0.92

3 7 0.011 0.42 10.7 0.1 2 20 214 232 213 234 0.91

4 7 0.026 1 9.5 0.4 2 23 237 259 237 259 0.97

5 7 2.6 1e+02 3.2 0.0 3 23 267 287 266 287 0.96

6 7 0.081 3.1 8.0 0.9 8 23 302 318 293 318 0.83

7 7 7.1e-05 0.0028 17.6 0.2 2 23 339 360 338 360 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.8e-05	0.00069	19.5	0.3	1	23	156	178	156	178	0.98
2	7	0.001	0.039	14.0	1.0	1	23	184	206	184	206	0.92
3	7	0.011	0.42	10.7	0.1	2	20	214	232	213	234	0.91
4	7	0.026	1	9.5	0.4	2	23	237	259	237	259	0.97
5	7	2.6	1e+02	3.2	0.0	3	23	267	287	266	287	0.96
6	7	0.081	3.1	8.0	0.9	8	23	302	318	293	318	0.83
7	7	7.1e-05	0.0028	17.6	0.2	2	23	339	360	338	360	0.97

Sequence Information

Coding Sequence: ATGGCTTCAACAGTAATCAAACAGGAAGTGGAATCGGAGACTTGCTCCGTTTGTGGCGGCGGTGGAGATCTCTTTACTCCAGAGGAGCATGACGCCGGTTCACTATCCATGCCAGTGCCTTTGCGAACTATGCTTTTacatttaaacaataataagGTCTTACCTGATGGTAAGCTATGTGTAAGTTGCATACGCCGTGCCTTAGAAGCTTATGAATTCAGCACAGCATTGAGCGCCAGAACAGCACCTCCGCTAAGCGAGAAAATTCGCGCTTTACGTCGAAAACTTCACGAATTGACACAAAAGATTGATGTTTTCATAGTTGTGGGAGGTCCAAGTGCTAATTCCGGAGGGGTTTATAGTCAAGATGATATAATTATGGTGGATAAGGATGCCTTGGCTGCTGCGGCGGCTGCTGATGATGAGGATATGGAGAAAGCGAGGAATGCATGTGGGGAGAGTGTTTATCAGTGTTCGATTTGTCCACTTTCTTTTCAGCATGCAAGTGAATACCGTGAACACATCGCCATCCACCCGGGCGGCGCGCGCCACTCGTGCTGGACCTGCGGCGCGCAGTTCACCAGCAAGGATGCTCTCAAGGACCACTCCACACTGCACGCGGCGCTAGCACAGAGCCTCGTGTGCAATCTGTGCAACGTCACCTTCCAGAGCAGCGTAGACATGCGTCGCCACGAGTCTACATGCGCCACTTGCCCAGTGTGTGAGATGCGTTGCGGCGCGCGCAGTACACTAGCCGCACATGCGCGTCGGTCGCACGCGCGCCAAGCGCCGCTTCTGTGTGCGCAGTGCTTTATCGTGCTGCCCAGTGCGGAGATGTTCGTGGCGCACGCGCTCACTCACCGCCAGGCGGACCGGTTCGTCTGTGGCTATGATGCGTGTATACTGAGATTTGCTACCAGGCACGACCTACTGGCGCACATCCGCAAATGCCACGCCGGGGAAGAGATCCCGGagcccgccgcgcccgccgacCTCGCCCCGCCCGCCACCGTGCCGTGCGACCACTGCGGCCGGACGTTCGGATCGGTGGCAGCAATGAAACGCCACGCCAGGGTGCACCGTCGGGAGACGCCACAGGAGGAGACGGACTGGGAGGGCGGCGAGATCGAGAAGGCCCTGAGCAGGATGCACGGCATTGAGCCATTGGAGGGTGACGTGGAGTACCTCGAGATGGAGGCCCTAGAAGAGATGTAG
Protein Sequence: MASTVIKQEVESETCSVCGGGGDLFTPEEHDAGSLSMPVPLRTMLLHLNNNKVLPDGKLCVSCIRRALEAYEFSTALSARTAPPLSEKIRALRRKLHELTQKIDVFIVVGGPSANSGGVYSQDDIIMVDKDALAAAAAADDEDMEKARNACGESVYQCSICPLSFQHASEYREHIAIHPGGARHSCWTCGAQFTSKDALKDHSTLHAALAQSLVCNLCNVTFQSSVDMRRHESTCATCPVCEMRCGARSTLAAHARRSHARQAPLLCAQCFIVLPSAEMFVAHALTHRQADRFVCGYDACILRFATRHDLLAHIRKCHAGEEIPEPAAPADLAPPATVPCDHCGRTFGSVAAMKRHARVHRRETPQEETDWEGGEIEKALSRMHGIEPLEGDVEYLEMEALEEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00802341;
90% Identity: iTF_00955133;
80% Identity: -