Mhyp012119.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:5124765-5133363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 0.15 12.1 2.4 1 23 332 354 332 354 0.99 2 10 0.83 32 4.8 2.3 1 23 361 384 361 384 0.91 3 10 0.052 2 8.6 3.2 1 23 388 410 388 410 0.98 4 10 0.00034 0.013 15.5 7.6 1 23 415 438 415 438 0.98 5 10 0.0014 0.054 13.5 0.4 2 23 443 465 442 465 0.95 6 10 1.3 49 4.2 0.0 3 20 478 495 478 497 0.90 7 10 3.8e-06 0.00015 21.6 0.4 2 23 579 600 579 600 0.97 8 10 1.1e-05 0.00044 20.1 2.4 1 23 606 628 606 628 0.97 9 10 0.00017 0.0067 16.4 0.2 1 23 634 656 634 656 0.98 10 10 0.00098 0.038 14.0 1.0 1 20 663 682 663 686 0.80
Sequence Information
- Coding Sequence
- ATGGTTTCTTTACAGTTTTGCATGATATGTCTGGACTCCAGTGAGGATTGTAAGTTGTACCCAATCAACAAGTGTAATTTGGATTTGGAATATCAACATTTGACTGGAATTTCGCTGCAGGATGAGCTGCAGTTTGAGCCCCAGTTCTGCACAGAGTGTGCTCAGAGACTGAGCAACTGCAGCAAGTTTAGGAACAAGAGTATGAGAGCTTATCATTTACTTTTGGGATTAATTGAGAAGCATAAAACGtTAACAAAGAAAATTATCCAGACAGTTGACAGAAAGGATAACAAACTAGCATCTAATATAGAAAAGAAACTGTACCAATCAGACCACTGCGACCTACACTTGACAGAAATTAAAGGAAACCAAGATTTGAGAGTGTATAGTACTCAAGAAAACAATGTGAATATTGAAGAACAAAAAATTTTTCCAAATAAACTAAtagACACAGTTATAGATCTAGACATTAAGCATGAAGTTCAAGTTAAAGATAATGACGATGTACTTTCAAACAATGATGACAATACTGACATTTTCAAAAATGAGGTTGTCAATAAACAAGATATCAAAAATGATGTAGAATCTAGCGATTATGACATTGATATAGATATTGATGTTTGTAATGATAATAATCATGATACGGCGACTTTGGCTGAACATGTTGAAAGAGAAAAACGAAATAATACAAAACAAGTCACGCTTAAAAACAATGCTAGAAAGAAACCAACTGCTCGGAATGTTAATGCTTTAAAAGGGAAGAAGgaaattaaatcagaaaaacaGATGAAAAAGAGACCTGTCAAAAAGATTTTGACAGTTGAAAGTAATAGAAAAGATGCTGCTGTTAGAACTAGGACTAGAAAGCGTGTCGAAAAACCTCCAGTCAATAAGTTAGACTTGAAATTGGTCGAAGAAGTGAAACTGACTCTGGAAGAGCAGAAGGTCGAGATAGAAAAGCGAAAAAACTCAGACAACTATATGTATTCGTGGTACAAATGTGACTTTTGTTACAAAGGTTTCCACCGTTTGGAGCCTTATAACGCTCATATGGAAAGACATACGGATAAATTCGGTCTGTTTGAATGCGAAGTGTGCCGCATTCGCTACAAAAGCGAAAGGCTCAAGAGGAAACACTTCAGTTATAACCACTGCTATATATATAAATGTACCGAGTGTGCGTATGTCTGCACCCACCGAAACTCGGCAGTACTTCACCAGCGGTGGCACGATGGCAAGATATACAAGTGTACACACTGTGATATGAAGTTCACtAAATGCTCGACACTCAAGTCGCACGAGCGTATAAAGCACCCTTCAGACTCCGTGTGCTCTCAGTGCGGTTTCTCGTTCATCGGCGAGAAGGGGCTGCGGTCGCATATGGACAGGAAACATCGCTTCGACGACACGGAGAACTTAGCCGGTCCGTTGTGTGAGCCCTGCAACATCCGCTTCGCCTCCGAGGACGCGTACATGCAACACATGTTTGCGTCTCCCAAACATGCGCCCGCCGAACTCCTCAGACCCAACTGTCCGCTGCAGAACAGAACGACCAACACGAATCAAATGCCCATCGATTGTGAACAGTGTGGTATGAGACTGGTGGGTGTCCGCCGATACGTTATGCACTTCAGGGCGAAGCACCCGGGCAAGACCCGCACGCAGTTCCCGAAGGGGATCCCCAAACTGCCGCGCGACAAATCCAGCTCCGTGATCAAAACCCACCCCAAGGCAGTGTGCGAGAAGTGCGGGAAAGTATTCCCGACGTCCAGGCGTCTCATTCAGCACATGCAGATGCACACCGGAGAGAAACTGCACAGATGTAAGATATGCGATAAGGGCTTTACCACGAACATGTCTCTGAGGATCCACGAGATGAGGCACAGCGGCCAGAACAGCTACCAGTGCGATGTGTGCCTCAAGGTGCTGTCCAACCCCGCCAACCAGCGGCGACACATGCTGCTACACGAAGACACGAGGCCTCTCTACGAATGCAGCCATTGCGGCAAGTCGTTTACGAGCGCGGCCGGGCGCGACTTGCACGTGTCGCACGTGCATTTCCACGTGCCGCGGCCCAAGCGCAACCGCCGCGTGCAACGAGCCACACTTGACACGAGACACAGCGGCAGTGCTAGCGACTCGCGAGACTAG
- Protein Sequence
- MVSLQFCMICLDSSEDCKLYPINKCNLDLEYQHLTGISLQDELQFEPQFCTECAQRLSNCSKFRNKSMRAYHLLLGLIEKHKTLTKKIIQTVDRKDNKLASNIEKKLYQSDHCDLHLTEIKGNQDLRVYSTQENNVNIEEQKIFPNKLIDTVIDLDIKHEVQVKDNDDVLSNNDDNTDIFKNEVVNKQDIKNDVESSDYDIDIDIDVCNDNNHDTATLAEHVEREKRNNTKQVTLKNNARKKPTARNVNALKGKKEIKSEKQMKKRPVKKILTVESNRKDAAVRTRTRKRVEKPPVNKLDLKLVEEVKLTLEEQKVEIEKRKNSDNYMYSWYKCDFCYKGFHRLEPYNAHMERHTDKFGLFECEVCRIRYKSERLKRKHFSYNHCYIYKCTECAYVCTHRNSAVLHQRWHDGKIYKCTHCDMKFTKCSTLKSHERIKHPSDSVCSQCGFSFIGEKGLRSHMDRKHRFDDTENLAGPLCEPCNIRFASEDAYMQHMFASPKHAPAELLRPNCPLQNRTTNTNQMPIDCEQCGMRLVGVRRYVMHFRAKHPGKTRTQFPKGIPKLPRDKSSSVIKTHPKAVCEKCGKVFPTSRRLIQHMQMHTGEKLHRCKICDKGFTTNMSLRIHEMRHSGQNSYQCDVCLKVLSNPANQRRHMLLHEDTRPLYECSHCGKSFTSAAGRDLHVSHVHFHVPRPKRNRRVQRATLDTRHSGSASDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -