Mhyp006440.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:3009354-3015106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.11 4.1 7.6 0.1 3 23 191 208 188 208 0.75 2 9 0.00067 0.026 14.5 1.3 2 23 218 240 217 240 0.94 3 9 0.91 35 4.7 3.1 5 23 246 265 245 266 0.82 4 9 0.0094 0.36 10.9 0.2 1 23 272 294 272 294 0.97 5 9 7.3e-05 0.0028 17.6 1.2 1 23 300 323 300 323 0.96 6 9 0.00028 0.011 15.7 7.0 1 23 329 351 329 351 0.97 7 9 0.002 0.077 13.0 4.3 2 23 358 379 357 379 0.95 8 9 4.5e-06 0.00017 21.3 0.2 1 23 385 407 385 407 0.98 9 9 0.00095 0.037 14.0 0.6 1 23 413 436 413 436 0.98
Sequence Information
- Coding Sequence
- atggcaaaaatAGACGTTTGTCGAATATGTTTAACCGAGGCAGTCGAAAGGGACATCACACAACTATCAGAAGAACTGAAAGGGGACAAGAAAAGTTATTGGGACATAATGTTGTTTTGCTTGAATATTCAGGTTGCACCAGATTCAAAAGTAACAACAAAGTTGTGCGATAAatgctttataaaaataatatcattcCACGAATTTAAGACACTGGCATTAAAAAACGATTCATATTTGCGACGTCTCCAAAACGAAGAGGATACTAAAATTGAGGTGATTGATATGGACAACATAAAATGTGAGGAAATGAGCAACGGATATTCTGATGATGGGTGTGACATGGACTCGCTTACCAAGATAGAGTTTAATATTaaacatgaaaataatatagatGATGTGCCGTCGGATGAAGAACTGCTTAGtgttataaagaaaataaagtatGAATATAGCACTGAAGAATGTAAAGAAAATAAAGAATCCCGTcccaaaaagaaatgtaaaggtagaaaaaaagtgaaagttaaaaaaaagcgTTGTAAAGAACCAGAACAACGAGAGAAAATATGTGAAGAATGCGGTAAAACTGTGGTGAACCTGGCTGAACATATGCAGTTACATCGACCCAAGGGAGAACGGACGAGGATTAAGTGCAAAGTCTGTGATAAAACATTTGCGTCATACAGTGCTCGgtacagacacaacaaagttaAACATTTGGGTATTAAGGAACATTGCAATGAGTGTGGTAAAAATGTTGTAAATCTACGTAGCCACAAACTCACTATGCACCACACTGACAACTTACCGTTTGTTTGTGTGCTGTGTGGTCAAGGCTTCATCTCGAAGGCAAAGAGAGATCTGCACATGCTTCGACACACGAAGGCTCGCCCGTTCGTGTGCGATATGTGCGACAAGGACTTCAAACACAACATTGCCTTGTTGTCACACAAACGGCAAGTACACGATAAAGAAAAGACGCATATGTGTCAAGTTTGCTCAAAAAGGTTCTTTAAGAAATATCATTTACAAATTCATTTAAGGAGTCACACTAAAGAGAAACCGTGCATATGCCCGGACTGCAACAAGTGCTTCAGCTCCACCACCATACTGAAGAACCATCGCCTCATCCACAGCGACACGAGAGACTTCCGCTGCGACCTGTGCGACATGGCCTTCAAGAAACCTGGGTACCTCCGTATCCACATGATAAGTCATACAAAGGAAAAGCGCTACCCGTGCGGATACTGCGCTGTGGCCTTCGGCCGCTCCGACCACCGCAAGCGGCACGAGCGCACCGCGCACCAGCGCCCCTTCCTCAACGAGCTGACAAATCCGCAAAAGCATGAAAGCGCACCGCTCACCAGCGATGACTTCTCGACGCCCAGAGCAATATGCGAGCAGCCAACACAACCAAACTGA
- Protein Sequence
- MAKIDVCRICLTEAVERDITQLSEELKGDKKSYWDIMLFCLNIQVAPDSKVTTKLCDKCFIKIISFHEFKTLALKNDSYLRRLQNEEDTKIEVIDMDNIKCEEMSNGYSDDGCDMDSLTKIEFNIKHENNIDDVPSDEELLSVIKKIKYEYSTEECKENKESRPKKKCKGRKKVKVKKKRCKEPEQREKICEECGKTVVNLAEHMQLHRPKGERTRIKCKVCDKTFASYSARYRHNKVKHLGIKEHCNECGKNVVNLRSHKLTMHHTDNLPFVCVLCGQGFISKAKRDLHMLRHTKARPFVCDMCDKDFKHNIALLSHKRQVHDKEKTHMCQVCSKRFFKKYHLQIHLRSHTKEKPCICPDCNKCFSSTTILKNHRLIHSDTRDFRCDLCDMAFKKPGYLRIHMISHTKEKRYPCGYCAVAFGRSDHRKRHERTAHQRPFLNELTNPQKHESAPLTSDDFSTPRAICEQPTQPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802258;
- 90% Identity
- iTF_00955047;
- 80% Identity
- -