Mhyp011635.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:276241-277886[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.075 2.9 8.1 0.1 2 20 161 179 160 183 0.89 2 10 2.7 1.1e+02 3.2 1.6 1 23 189 211 189 211 0.76 3 10 0.029 1.1 9.4 3.8 2 23 218 239 217 239 0.95 4 10 8.4e-05 0.0033 17.4 0.3 2 19 245 262 244 265 0.93 5 10 1.9e-05 0.00072 19.4 2.0 2 23 287 308 286 308 0.96 6 10 0.00016 0.0063 16.4 1.6 1 23 315 337 315 337 0.97 7 10 1.2e-05 0.00048 20.0 0.3 1 23 343 365 343 365 0.95 8 10 0.00019 0.0073 16.2 3.0 1 23 371 393 371 393 0.96 9 10 6.1e-05 0.0023 17.8 1.6 1 23 399 421 399 421 0.98 10 10 2.7e-06 0.0001 22.1 4.6 1 23 427 450 427 450 0.98
Sequence Information
- Coding Sequence
- atgagTGTATTAGAGAATGCGTACTGCAGGCTGTGCGCTGAACTGAAGTCATCGACGAAACTTGTAAATTTACTAAGCGAAGATGCGATACGATATGATGTAGTCACAAAATTGAAAAGAATCAACattaatattgaatttattgAGGATTCCTTGCCTAGCACAGTCTGCTATCAATGTAAAGCGTCCCTCGATAAAGCATTTgacttaatattatacatagaAAAGGCACAAGAAGTATTGGAAGACATTGTTTTAGTCAAAAATATTAAGAAAGAAGTATTAGCATCATCAGATTTAGATAACGATCTAGACCCGTGCATGTCCTACGACATCGATATTAAACTCGAAGACACTCACACACGCGATTCTAAAAAACCAGTAAAATGTCAcgagaaaaaaaagaagaaaagtgCAGCTAACAATTTAGATGGCATACCTTTATCCCAGTTGAAATTAACATGGAAGGAATATAGCTGGCAATGTGCATATTGTGAAACCCTATTTCCAACGATAGATGAGTTAAAAGCTCACTCGGTACAATATCACGAATGCTGCAACCCTTACAGATGTACCGACTGCAATATTCGTAAGTTAAAACTGGACAGTTTTATTGCACACGTGAAAAGACATagaaaatacttaaaattatcGTGTTACAAGTGCCATAAGAGGTTCTCAAAGATAACGGATGCAAAATCACATCAAAACCTTCATGTAGATTCAAGTTTGTACTGTACGGGATGCAATCAAACTTTTaaaacatcagacgagttgacTAACCACAGCAATGCGTACAATAGAGATTTAAGAACCAGACAGTTTCCACCGATAGCTAAGGATAGATTGGAAAGTTTAAACTGTCCCATATGTCACAAACTATTCAAATATAAAGGGACGTTAACAAACCATTTGCTAACACACACGGAGAGAAAACGCGAACACACTTGCGAGAAATGCGGTAAACGATTCTTGAGCAAGCAGAATCTAGCCGGCCATATGATGTTACATGATGACGTTAGGCCGTATCCGTGCGAAATATGCAAATTTAGATTTCGAACACCATCACAATTACGTATGCATGTTGGTATTCACGATGGAGTCAAGCCGTTTGAATGTGACCAGTGTGGCCGTTGCTTCCGTTTGAGAAAGCAACTTTTCAACCACAGTATCGTGCACACGGATGCTTTGCCATACGTATGTAGTTACTGCAGCAAAGCCTTTCGCTTTAGAAGCATTCTAAATCAACACATTCGTCAACACACGGGTATCAAACCCTATTCATGCCACTATTGCGAAAGAAATTTCACGAATTGGCCGAATTATAACAAGCATATGAAACGGAGGCACGGCGTAGATATGGCGAAGAAGAAACGGACACCTAAAGGTGTATACCCGTTAGACCCAGTGACCGGTGAATTGGTTTTGtatgaagaatcaaataaaactcACGAATGGAAGAGTAAACTGATGGAAGGAACACGGAAACCGGGCCGTCCGAAAGGTCACAACAATGATAAGGCGAATGTAATCTTAGACCAAAATGTACAATTAaatgatattaaaatttaa
- Protein Sequence
- MSVLENAYCRLCAELKSSTKLVNLLSEDAIRYDVVTKLKRININIEFIEDSLPSTVCYQCKASLDKAFDLILYIEKAQEVLEDIVLVKNIKKEVLASSDLDNDLDPCMSYDIDIKLEDTHTRDSKKPVKCHEKKKKKSAANNLDGIPLSQLKLTWKEYSWQCAYCETLFPTIDELKAHSVQYHECCNPYRCTDCNIRKLKLDSFIAHVKRHRKYLKLSCYKCHKRFSKITDAKSHQNLHVDSSLYCTGCNQTFKTSDELTNHSNAYNRDLRTRQFPPIAKDRLESLNCPICHKLFKYKGTLTNHLLTHTERKREHTCEKCGKRFLSKQNLAGHMMLHDDVRPYPCEICKFRFRTPSQLRMHVGIHDGVKPFECDQCGRCFRLRKQLFNHSIVHTDALPYVCSYCSKAFRFRSILNQHIRQHTGIKPYSCHYCERNFTNWPNYNKHMKRRHGVDMAKKKRTPKGVYPLDPVTGELVLYEESNKTHEWKSKLMEGTRKPGRPKGHNNDKANVILDQNVQLNDIKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151492;
- 90% Identity
- iTF_00954927;
- 80% Identity
- -