Basic Information

Insect: Maniola hyperantus
Gene Symbol: -
Assembly: GCA_902806685.1
Location: NC:5711754-5726833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.0048 16.8 1.6 1 23 220 242 220 242 0.99

2 12 3.4 1.3e+02 2.8 0.1 1 23 249 272 249 272 0.87

3 12 1 40 4.5 2.8 1 23 276 298 276 298 0.91

4 12 0.0096 0.37 10.9 1.2 1 23 303 326 303 326 0.94

5 12 0.002 0.078 13.0 0.1 3 23 332 353 331 353 0.97

6 12 0.036 1.4 9.1 0.1 2 20 360 378 359 380 0.94

7 12 0.02 0.78 9.9 0.1 3 23 393 413 392 414 0.94

8 12 0.00069 0.027 14.5 0.5 2 23 420 442 419 442 0.96

9 12 9.7e-06 0.00037 20.3 0.9 2 23 463 484 462 484 0.97

10 12 1.9e-05 0.00074 19.4 1.6 1 23 490 512 490 512 0.99

11 12 8e-06 0.00031 20.6 3.7 1 23 518 540 518 540 0.94

12 12 4.2e-06 0.00016 21.5 2.4 1 23 546 569 546 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.0048	16.8	1.6	1	23	220	242	220	242	0.99
2	12	3.4	1.3e+02	2.8	0.1	1	23	249	272	249	272	0.87
3	12	1	40	4.5	2.8	1	23	276	298	276	298	0.91
4	12	0.0096	0.37	10.9	1.2	1	23	303	326	303	326	0.94
5	12	0.002	0.078	13.0	0.1	3	23	332	353	331	353	0.97
6	12	0.036	1.4	9.1	0.1	2	20	360	378	359	380	0.94
7	12	0.02	0.78	9.9	0.1	3	23	393	413	392	414	0.94
8	12	0.00069	0.027	14.5	0.5	2	23	420	442	419	442	0.96
9	12	9.7e-06	0.00037	20.3	0.9	2	23	463	484	462	484	0.97
10	12	1.9e-05	0.00074	19.4	1.6	1	23	490	512	490	512	0.99
11	12	8e-06	0.00031	20.6	3.7	1	23	518	540	518	540	0.94
12	12	4.2e-06	0.00016	21.5	2.4	1	23	546	569	546	569	0.97

Sequence Information

Coding Sequence: ATGGCGGAATTATTGGCGTGTCGTGTGTGCCTTGCGACGGACAATATAAAATTGTACAACATgtatcacttcaattttgtaCAAGCATATGAAATTCTAACTGGAATTGAGTTTTCACTACAAGAGGGTTTGCCGCACCATATCTGCAGCTACTGCAGCGCCATGCTGCTCAAGAGTGCGTCTTTTAAAGAGAAATGCTGCACCACTCAGCAGATTTTGCTGAATTCTATTCAATCACACCAAGTGGTATCATTGGAAAGCCTGCGTGTAATAAACCACCAGTTTGAACTGAACCTGGTACACGAAACCAACTACCCCACTGTGCGCATAGAGTATGTAGAGCCGGAGATCAAACACGAGATAGACAATGTAGACTATGTGCAGTTGACTGTGGAAGAGTTGAAACCTAAGAAgaggaaaaagaagaaaattaaaCAGGAAATAGAAGACCTAGTCAAACTTGAAGAGGACTTCAAACAAGATCACAGCTACATCGACATAGACAATGACGTCACCAACTATGACAGTGACGTCATTAACGAAGAAATACCAATACCCGAAGACCTCAAAGACGTTGAGGTTATATACCTGAGCAAATCTGAGCAGTTATCTGAGATAGAGCAGAGGAAAACATCGTCGAATTATATCAACTCCTTTTATAAGTGCGATAAGTGCTTTAAGGGCTTTATAACGGACGCTACTTTTAGGAATCATATGCTGAGTCATGATGAGGAACGTGGCGAGTTCGTGTGCGGGATATGTCAGTCGCGATGGGCGGAGGCGAGGCAGCTGAGGACGCACATAGTCAACTCGCACGAGAGGAAGTACGTGTGTAAACTGTGCGATCACGTGTCTAGATCTAGTCACAGAGCGAAGGAGCATTCGAACTGGCACAACGGGTTTACGTTCGACTGCAAGATATGCGGCGCCAGTTTTGCTAAATCAACAAGTCATTTGACTCATATCCGTCTTCAACATCCGTCGAGCAACGCCTGCGATGTGTGTGGGGAATCCTTTATAGGGGAGTTTGGGTTGAGGATGCACAAGCGAAAAGCGCACagttCCCACTCTCCGTCCACGTGTCCTCAATGCAACGCCAAGTTCCACAGCATCGAAGCGCTGGCCAGGCATCTCGACCTCTCCCTCAACGACACTTGCGACCCAACTGTGAGGCCATGTCCATACTGCGGGGAAGGGTACCCATCCGATGAAGACCAGAAAGAACATCTGCAGCTTCACCATAAAGACGAGAGCGTTAGTTGCGACGAGTGTAAGAGAACGTTCAACAACGAGCGGTCGTACGCCATACATTACCAGCGCGTCCACCTCGGAGTGAAGCTGAAGCAAAACAAGCCGAGGACTCTGAAGCGGCCCAGCGAGAGTGTGGTCTGCGAGATATGCGGGAAGAAGTGCATTACGAAAGCGACGTTAACCTACCATCAGCGCATACACACCGGAGAGAGGCCGTTCCAGTGTACCGAGTGCCCGAAGAAGTTCAGTGTCTTTCAGAGGTTACAGATTCACCTACGGACTCACACCGGGGAAAGTCCGTATCAATGCAAGCATTGTCCGAAGGCGTTCAAGCACAAGGCGGCTCTCAACAGACACGATCGAGTACACACGGGGGCGAAGCCCTACAGCTGTTCCCACTGCGGCAAGTCGTTCTCGCAGTCCAACTCCATGAAGCTGCACGTCAGCACGGTGCACCTCAAACTGCCGGCGCCCTACCGCGCGCGGCGCTCCAAGCTTGTGTGA
Protein Sequence: MAELLACRVCLATDNIKLYNMYHFNFVQAYEILTGIEFSLQEGLPHHICSYCSAMLLKSASFKEKCCTTQQILLNSIQSHQVVSLESLRVINHQFELNLVHETNYPTVRIEYVEPEIKHEIDNVDYVQLTVEELKPKKRKKKKIKQEIEDLVKLEEDFKQDHSYIDIDNDVTNYDSDVINEEIPIPEDLKDVEVIYLSKSEQLSEIEQRKTSSNYINSFYKCDKCFKGFITDATFRNHMLSHDEERGEFVCGICQSRWAEARQLRTHIVNSHERKYVCKLCDHVSRSSHRAKEHSNWHNGFTFDCKICGASFAKSTSHLTHIRLQHPSSNACDVCGESFIGEFGLRMHKRKAHSSHSPSTCPQCNAKFHSIEALARHLDLSLNDTCDPTVRPCPYCGEGYPSDEDQKEHLQLHHKDESVSCDECKRTFNNERSYAIHYQRVHLGVKLKQNKPRTLKRPSESVVCEICGKKCITKATLTYHQRIHTGERPFQCTECPKKFSVFQRLQIHLRTHTGESPYQCKHCPKAFKHKAALNRHDRVHTGAKPYSCSHCGKSFSQSNSMKLHVSTVHLKLPAPYRARRSKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00954877;
90% Identity: iTF_00954877;
80% Identity: -