Mhyp010584.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:996408-1010350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.38 15 5.9 0.1 1 23 181 203 181 203 0.98 2 12 0.01 0.39 10.8 1.0 2 23 211 232 211 232 0.97 3 12 1.2 45 4.3 0.2 1 23 236 259 236 259 0.93 4 12 7.7e-06 0.0003 20.6 1.7 1 23 264 287 264 287 0.96 5 12 0.071 2.7 8.2 2.3 2 23 294 315 293 315 0.96 6 12 5.8e-06 0.00022 21.0 1.4 2 23 328 349 327 349 0.96 7 12 0.00011 0.0043 17.0 2.4 2 23 356 377 356 378 0.95 8 12 0.0007 0.027 14.5 0.1 2 23 404 426 403 426 0.94 9 12 0.00029 0.011 15.6 1.5 1 23 433 456 433 456 0.95 10 12 0.002 0.077 13.0 0.3 6 23 466 484 465 488 0.97 11 12 1.4e-05 0.00056 19.8 0.7 2 23 494 515 493 515 0.97 12 12 7.1e-06 0.00028 20.7 1.4 1 23 520 543 520 543 0.97
Sequence Information
- Coding Sequence
- ATGACTaccaaaatagaaataaaaattgagCCACAAGATGCAGAGAGTGACGAACATGATGGAATGGATTcaaatttgaatttggaacaaCCTGGATGTTCACTGAATCCTGTGTTCAATGAAAACTTTGTGGGAATAAAGCAGGAGGTGCCAGATATACAGATAAAATTAGAGCCATTAGAAGAGCCACATGATGAGTACGAAACGAGTGGCATAGATCCGGAGATGGTTTTGATGAAACTGGAGCACCATATGTACGAAAGTGATGAGACAATAAAGTTACCGCGAGCAAGAGTTGTGAATTATAAAGAAGATGATTCTGATGAAGAGTATCTGCCACACATGAAAACTGTCAAAAGGAGCCAAAAGAAATATCGTAAGCAAGAGCCAAATGTCAAACCTTTGCTTAAAAGTCGACCAAGAACAGACGAACAGACGTATTCGGAGGAAGTAACCAGCAACATAGAGATAGTGACCATAGACGAGCAAGCGCGACAGGCTGAGCACGAAGAGTCGGTGCGAGCGCGCAAGCACATGAACTACACGTGCGAGCTGTGCGCTGTGGGGTTCGTTATCAAAGAGGCGTACGACATGCACTTGAAGATGCATTCTCCTGAAGCCGGGGCTGAAGAATGTGACATCTGCAAACTGCGTTTAAAAACTCAGGACATGCTGTATCAGCACAAACTGCGGCACTATCGGCGCTACCGGTGCTCTATATGTCGGTTTCTGCAGAAGGATAAGGACACAGTAGCTGCGCATATCATGAGTGAGCATACGGGGACTGCGTTCGTGTGCCAACACTGCGGGCGGGACTACAAACGGCCTGCGTACCTCAGTCGCCACATCAAGCAAATGCACACCAAGCCCATACGACTGGAATGTCCCGTCTGTCAGCGCGTGTTCCACGAGCGGGGCTGGTACCGCTGCCATGTCAgAACTCATAACGAGCAAGTGAAAAGGAGCATAACTCGGAAGGTGACGTGCGCGCACTGCGGCCGCGACTTCCGCAACAAGTCCTATCTCATCCGACACCTGTTCGTGCACGAGGACAAGCGGCCCGCCACCTGCCAAGTGTGCTCCAGAACGTTCAAGAACAGCGAGGTGCTGCGCGTTCACATACGACAGCATCACGGACATAACCCACCACGGGACTACTCTACTGACGGTCTTCAATCAACAAGGCTGCCGAGGTTCGGCGCGGACACGACGTGCGTGGCGTGCGGACGCATCCTCACCACGCCGGCCATGCTCAACCGACACATGCAGCGCATGCACACCGAGCGGATCAAGAGATTCCAGTGCGACTACTGCCAAAGATGCTACTATTCGAAGGCAGAGGTCCGCGCGCACATAGAGTGGACGCACCTGCAGCAACGCAAGCACGCGTGCGCGTGCGGGCGCGTCTTCCGTTCCCCCGCTCTACTACAACACCACGCGCTCACGCGGCACCTTAACATACACCAGCCCAAGGATAAGAGCTGCACGGTCTGCGGGAAGATGTTCGCGAACCAACAAGTGTTAACGCGACACGTCAAAAGTCACTCCGGAGAGACGTACCCGTGCACAGAGTGCGGACAAAAGTTTAAGACTCAGTCCTATGTCAAAGTTCACTACAAGATAAAACATCTCAACATGACGCGGGCCCAGGTCAAAGCACAGAGCAGAAGGAAACTTATCATGATTCACAATGAAGAACCCATAAAGGCCAAAATCAAATCTAGCAAAAAATCCAAACTCAGTACCGTAGATCCGTTGAATTTAGACAATTTTGAAGCCAAAATGAAACAAGCACTCGAAAAAGACGTGAAAAAAGAAGTGTTGGATCCGCCCGTAGCTGTACCGCTTTTCGAAACGTTTGTCGATATACAGAGGGAATGTTGA
- Protein Sequence
- MTTKIEIKIEPQDAESDEHDGMDSNLNLEQPGCSLNPVFNENFVGIKQEVPDIQIKLEPLEEPHDEYETSGIDPEMVLMKLEHHMYESDETIKLPRARVVNYKEDDSDEEYLPHMKTVKRSQKKYRKQEPNVKPLLKSRPRTDEQTYSEEVTSNIEIVTIDEQARQAEHEESVRARKHMNYTCELCAVGFVIKEAYDMHLKMHSPEAGAEECDICKLRLKTQDMLYQHKLRHYRRYRCSICRFLQKDKDTVAAHIMSEHTGTAFVCQHCGRDYKRPAYLSRHIKQMHTKPIRLECPVCQRVFHERGWYRCHVRTHNEQVKRSITRKVTCAHCGRDFRNKSYLIRHLFVHEDKRPATCQVCSRTFKNSEVLRVHIRQHHGHNPPRDYSTDGLQSTRLPRFGADTTCVACGRILTTPAMLNRHMQRMHTERIKRFQCDYCQRCYYSKAEVRAHIEWTHLQQRKHACACGRVFRSPALLQHHALTRHLNIHQPKDKSCTVCGKMFANQQVLTRHVKSHSGETYPCTECGQKFKTQSYVKVHYKIKHLNMTRAQVKAQSRRKLIMIHNEEPIKAKIKSSKKSKLSTVDPLNLDNFEAKMKQALEKDVKKEVLDPPVAVPLFETFVDIQREC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954911;
- 90% Identity
- -
- 80% Identity
- -