Mhyp001325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola hyperantus
Gene Symbol
-
Assembly
GCA_902806685.1
Location
NC:4664450-4666732[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0033 0.13 12.3 1.4 1 23 9 31 9 31 0.97
2 26 0.00014 0.0054 16.7 1.8 2 23 38 59 37 59 0.97
3 26 1e-06 4e-05 23.4 1.7 1 23 65 87 65 87 0.98
4 26 0.053 2 8.5 4.3 1 23 93 115 93 115 0.98
5 26 0.00039 0.015 15.3 5.6 1 23 121 143 121 143 0.98
6 26 4e-05 0.0015 18.4 0.8 1 23 149 171 149 171 0.98
7 26 0.0018 0.069 13.2 2.3 1 23 177 199 177 199 0.98
8 26 0.0046 0.18 11.9 7.0 1 23 205 227 205 227 0.99
9 26 0.0018 0.069 13.2 2.8 1 23 231 253 231 253 0.97
10 26 0.091 3.5 7.8 7.6 1 23 259 281 259 281 0.98
11 26 0.00027 0.011 15.7 2.8 1 23 287 309 287 309 0.98
12 26 0.0032 0.12 12.4 4.7 1 23 315 337 315 337 0.98
13 26 0.01 0.39 10.8 8.3 1 23 343 365 343 365 0.98
14 26 0.0096 0.37 10.9 5.6 1 23 371 393 371 393 0.99
15 26 0.002 0.079 13.0 2.4 1 23 399 421 399 421 0.98
16 26 3.2e-05 0.0012 18.7 0.7 1 23 427 449 427 449 0.98
17 26 7.8e-05 0.003 17.5 0.4 1 23 455 477 455 477 0.98
18 26 0.0086 0.33 11.0 3.7 2 23 484 505 483 505 0.95
19 26 0.0019 0.073 13.1 2.1 1 23 511 533 511 533 0.98
20 26 0.0028 0.11 12.6 9.5 1 23 539 561 539 561 0.97
21 26 0.0076 0.29 11.2 1.2 1 23 567 589 567 589 0.98
22 26 0.0072 0.28 11.3 5.7 1 23 595 617 595 617 0.98
23 26 0.0011 0.042 13.8 3.7 1 23 623 645 623 645 0.98
24 26 0.0044 0.17 12.0 2.7 1 23 651 673 651 673 0.98
25 26 0.015 0.58 10.3 4.8 1 23 679 701 679 701 0.98
26 26 0.0032 0.12 12.4 8.5 1 23 707 729 707 729 0.98

Sequence Information

Coding Sequence
ATGACTGACACTGGCAAGAAACCTTTTTCTTGCGATATTTGTCCATTTACAACTGTAAGCCATGAGACTTTGAAAAGCCACAGGAGTATTCACATGGGAGATAAATCTGTTTCATGTGAGCTTTGTGAGTTTAAATGTAGGCAAAAAGGTGGTTTAAAAgctcacatgaggactcactcaGGAGAGAAACCGCATCAGTGTAACCTGTGTGATAGGAAATTTGCAACAAAACCTACTTTAACTGCTCATATGATGACTCATACGCGAGAAAAACCTTTCTGTTGTGACACTTGTTCATTTTCAACTGCACATAAAGATCGTTTAGTATCACATATTATGACTCACACGGGTGAAAAGCCTTTCTCTTGCAAGCATTGCGAGTTTAAATGTAGGACTACCGGCGCTTTAGAACGCCACATTAGGACTCACACTGGATTGAAACCTCACTATTGTAACATTTGTAATACGAAGTTTGCTGAAAAAGTTGCTTTAATTGGTCATATGAGGACTCACACCGGCGAGCAACCATTTTCTTGCAATGTTTGTTCATTTACAACTGCACATAAGAGTCGTTTAGTGACGCATATAATGACTCACACAGGTGAGAATCCTTACTCTTGCGAGCAGTGTGAGtttaaatgtaaaacaaaatgTGGTTTAAAATCTCACATTAGAACTCACAATAGAgcttatttttgtaatatttgctatgtaaaatttaatcaaaaagaaaaattaaagtcACACAAGTTGTCTCATACTGATGATAAACCCTTCTGTTGCGACTATTGCGATTTTACATGTCGAACCGCAACGCTTTTAATATGTCACATTAGGACTCACACTGGGGAGAAACCTTTTCCTTGCCACATTTGTCCATTTACTACTGCACATAGAGGTCGTTTAACGACGCATATtagaactcacactggcgagAAACCTTACGCATGCAAGCTTTGTGAGTTTAAATGTAAAACCAGTAGTGCTTTAAAATCTCATTTTAAGACTCACACTGGAGCTAAACCATTTTCTTGTAATCATTGTACGTTTAAATGTTCGGAAAAAAGTCGTCTAAAATCTCACATGAATACTCACATTGTTGAGAAACCTTACTCCTGCGAGCAGTGTGAGTTCAAATGTAAGACCactttgtatttaaaaaatcacatGAAGACTCACACAGGCGATAAACCATTCTCTTGCAACATTTGTGACTTTAAATGTAGGGTAAAATACGTTTTAAATGTTCATGCAAGGACTCACACGGGAGAGAAAcgtttttattgtaacatttgtaATGGAAAATTTGCATATAAATCGACTTTGATTGGTCATATGAGAAGTCACACTGGGGAGAAACCATATTCATGTGATGTTTGTCCATTTACAACTGCACGATCTGAGTCTCTGCTAAAACACAGGAGGAtacacactggtgaaaaacccaTTTCGTGTAAGCTTTGTGAGTTTAAATGTTTGCGTTCGGAGAATCTAAAATCCCATATGAGGACTCACAGTAATGAGAAACCTTTCTCTTGCAAGCTTTGCAATTATAAATCTAGGTTTGGAACTAGTTTAAAAGCTCATATAAGGACTCACACAGGAAATAAACCTCATCATTGTAAATTATGTGATAAGAAATTTGCTCAAAAGACACAGTTAAATTGTCATATGAGAACTCACACCGGAGAGAAGCCGTTTTCTTGCGACACTTGTTCATTTTCAACTGCTCATAAAGATCGCTTAGCATCACACATTATGATTCACACTGGTCTAAAACCTTTTTCTTGCAAGTATTGTAAATCGAAATTTAGAACTGCCAGCGCTTTAACATGCCACACcaggactcacactggtgagAAATCCCACTACTGTAACATTTGTAACATGAAATTTAGTGAAAAATATATGTTAATTTTTcatatgaggactcacactggggAGAAACCCCATTCTTGCGAAATTTGTCCTTTTACAACTGCACACCAAGGTCGTTTAGTAACGCACaggagaactcacactggtgagaGACCTTACCCTTGCGAGCAGTGTGAGTATAAATGTAAGACACTTAGCGGTTTAAAATGTCACATTAGGACTCACACCGGAGAAGAACCTTATCATTGCAACCTTTGTGATAAGAAATTTAAACATAAGAGATCATTAACTTTTCACATGATGCGTCACTAA
Protein Sequence
MTDTGKKPFSCDICPFTTVSHETLKSHRSIHMGDKSVSCELCEFKCRQKGGLKAHMRTHSGEKPHQCNLCDRKFATKPTLTAHMMTHTREKPFCCDTCSFSTAHKDRLVSHIMTHTGEKPFSCKHCEFKCRTTGALERHIRTHTGLKPHYCNICNTKFAEKVALIGHMRTHTGEQPFSCNVCSFTTAHKSRLVTHIMTHTGENPYSCEQCEFKCKTKCGLKSHIRTHNRAYFCNICYVKFNQKEKLKSHKLSHTDDKPFCCDYCDFTCRTATLLICHIRTHTGEKPFPCHICPFTTAHRGRLTTHIRTHTGEKPYACKLCEFKCKTSSALKSHFKTHTGAKPFSCNHCTFKCSEKSRLKSHMNTHIVEKPYSCEQCEFKCKTTLYLKNHMKTHTGDKPFSCNICDFKCRVKYVLNVHARTHTGEKRFYCNICNGKFAYKSTLIGHMRSHTGEKPYSCDVCPFTTARSESLLKHRRIHTGEKPISCKLCEFKCLRSENLKSHMRTHSNEKPFSCKLCNYKSRFGTSLKAHIRTHTGNKPHHCKLCDKKFAQKTQLNCHMRTHTGEKPFSCDTCSFSTAHKDRLASHIMIHTGLKPFSCKYCKSKFRTASALTCHTRTHTGEKSHYCNICNMKFSEKYMLIFHMRTHTGEKPHSCEICPFTTAHQGRLVTHRRTHTGERPYPCEQCEYKCKTLSGLKCHIRTHTGEEPYHCNLCDKKFKHKRSLTFHMMRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-