Basic Information

Insect: Maniola hyperantus
Gene Symbol: -
Assembly: GCA_902806685.1
Location: NC:4832558-4838920[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-07 3.9e-06 26.5 1.2 1 23 182 204 182 204 0.98

2 14 0.00061 0.023 14.7 0.8 1 23 210 233 210 233 0.96

3 14 0.00018 0.0069 16.3 4.9 1 23 239 261 239 261 0.97

4 14 4.6e-06 0.00018 21.3 5.7 1 23 267 289 267 289 0.99

5 14 4.6e-06 0.00018 21.3 3.0 1 23 295 317 295 317 0.98

6 14 7e-07 2.7e-05 23.9 1.1 1 23 323 346 323 346 0.95

7 14 9.9e-05 0.0038 17.1 3.8 1 23 352 374 352 374 0.97

8 14 2.4e-05 0.00092 19.1 0.4 1 23 380 402 380 402 0.98

9 14 0.00032 0.012 15.5 1.0 1 23 408 430 408 430 0.98

10 14 1e-07 4e-06 26.5 0.8 1 23 436 458 436 458 0.98

11 14 1.2e-06 4.5e-05 23.2 1.4 1 23 464 486 464 486 0.98

12 14 0.065 2.5 8.3 3.0 1 23 492 511 492 511 0.95

13 14 1.6e-06 6.2e-05 22.8 0.8 1 23 517 539 517 539 0.98

14 14 0.00039 0.015 15.3 7.4 1 23 545 567 545 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-07	3.9e-06	26.5	1.2	1	23	182	204	182	204	0.98
2	14	0.00061	0.023	14.7	0.8	1	23	210	233	210	233	0.96
3	14	0.00018	0.0069	16.3	4.9	1	23	239	261	239	261	0.97
4	14	4.6e-06	0.00018	21.3	5.7	1	23	267	289	267	289	0.99
5	14	4.6e-06	0.00018	21.3	3.0	1	23	295	317	295	317	0.98
6	14	7e-07	2.7e-05	23.9	1.1	1	23	323	346	323	346	0.95
7	14	9.9e-05	0.0038	17.1	3.8	1	23	352	374	352	374	0.97
8	14	2.4e-05	0.00092	19.1	0.4	1	23	380	402	380	402	0.98
9	14	0.00032	0.012	15.5	1.0	1	23	408	430	408	430	0.98
10	14	1e-07	4e-06	26.5	0.8	1	23	436	458	436	458	0.98
11	14	1.2e-06	4.5e-05	23.2	1.4	1	23	464	486	464	486	0.98
12	14	0.065	2.5	8.3	3.0	1	23	492	511	492	511	0.95
13	14	1.6e-06	6.2e-05	22.8	0.8	1	23	517	539	517	539	0.98
14	14	0.00039	0.015	15.3	7.4	1	23	545	567	545	567	0.98

Sequence Information

Coding Sequence: ATGTCTGAATTGTTCAATAACAGCGGCATTTGTCGCTGTTGCCATGCACAAGGCAGTTTCAAAAGCTTAAACCATACATATATCTTCGAAGGGCGCCAAGAGATATATTCAAATATGTTACTACAAACATTTAACATAGAAATAAAACCTGGGCCAACAGTGCTGGACGTGTATTCTATATGTGAAACATGTATCCCGAGGCTGCGGGACGCGGAACAGTTTAGACACCAAGTAGTTAGCTGTGAACAGCTATTCTAtcagtattataatatacatttgAATAGAGGAATAGAATCCTATGATAAGGAAATAAAGGAAGAAGTAGAGGAAAAAGATGAAAAGAAGCAAGAAGATTTGAGCATTGAACAAGACTGCAGTGTTCAAAaatttgatgatgatgGTGTTTCCCATACAGAGACTTTTGAGACAGAGGATGACGACCAACCTCTGTCTACCCTCCAAAGTCAGTACAAACCGAACGACCTCTGGGAATCATGTGAcgACGTAAACTCCAAACCGACACGCAGAAAAAAAAGCAAGGAGTTCAGCTGCGAAATATGTAAAAAGAAGTTCTCCTATAACGGATCACTGGAAGTACACATGCGGACGCACAGCGCAGAGAAGACCTACCTCTGTCGCATATGCAACACTAGATATACACTAAACAAGGAACTAATTAACCATATCAACACAACACATTCCGTCAACGGCATATTCTGTTGCACGTATTGTTCGAAAAGTTTCGAAAAAGCACGCCTTTTGAAAAACCATCTAACTACCCACTTTGGAGAAGAAAAGTTCAAGTGCAGCCATTGCAACAAGGAATTTCAACGGAAGAAAGGCCTCAAAGAGCACATGAAAACTCACACAGGCGAAAAAAATTTCTCATGCACAATTTGTAACAAATCCTTTGGCCACAATCAAACATTAAAGTCCCATATATTGACTCACACAGGAGAGCGGCCGTATGTTTGTGACGTATGCGGTCGAAGATTCCCTCAACGCACACATTTGAAGCGGCACATATTCATAATACATACTGGAGTAAAACCGCATAGTTGTAAAGTGTGTAGCAAACAGTTTTCCAGCAAAAGTTATCTATCAATACACGAAAGGCAACATACTGGGGAAAGACCGTACGCTTGCGAGGTGTGTAAGAAAGATTTCACGGCGTACACCACCCTAAAAGTCCATATGCGAGTTCATACCGGAATAAAACCGTATATATGCTCGTTCTGTGATAGACAGTTCGCTCAGATGGCCAGTTTTAAACTCCACGAAAGAACCCATACCGGTGAGCGACCGTTCTCTTGTAAAGTGTGTAAAAAAGCGTTTTCAGATAACGGTTATCTGAAAATACATATGCGCGTGCACACGGGGGAAAAACCGTTCAATTGCGAGGTTTGCAAACGGTCCTTTAGAGAGACTGGGCAGTTGAAACGTCATATGCGGGTACATACCGGTATCAAACCATACACCTGTAAGATATGCAATAAACAAATCGGTAATTTGTCCAAACATATGCGCGTACATTCCGACGAGAGACCGTTTAATTGTAACGTGTGTAATAAACAGTTTTCGATCAACGGGAACTTGAAATTGCATATGCGTATTCACACCGGTGAAAGGCCGTTTAGTTGCAATATGTGCAATAGTCATTTTACACAGAGCAGCGGATTGAAAAGACATAGGTGTACTCATATAGGTAAAGCTGAATGA
Protein Sequence: MSELFNNSGICRCCHAQGSFKSLNHTYIFEGRQEIYSNMLLQTFNIEIKPGPTVLDVYSICETCIPRLRDAEQFRHQVVSCEQLFYQYYNIHLNRGIESYDKEIKEEVEEKDEKKQEDLSIEQDCSVQKFDDDGVSHTETFETEDDDQPLSTLQSQYKPNDLWESCDDVNSKPTRRKKSKEFSCEICKKKFSYNGSLEVHMRTHSAEKTYLCRICNTRYTLNKELINHINTTHSVNGIFCCTYCSKSFEKARLLKNHLTTHFGEEKFKCSHCNKEFQRKKGLKEHMKTHTGEKNFSCTICNKSFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPHSCKVCSKQFSSKSYLSIHERQHTGERPYACEVCKKDFTAYTTLKVHMRVHTGIKPYICSFCDRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFNCEVCKRSFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPFNCNVCNKQFSINGNLKLHMRIHTGERPFSCNMCNSHFTQSSGLKRHRCTHIGKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00802114;
90% Identity: iTF_00954800;
80% Identity: -