Mhyp011517.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:5151170-5181369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00088 0.034 14.1 2.3 1 23 225 247 225 247 0.99 2 26 1.9 73 3.7 0.0 2 23 275 297 274 297 0.89 3 26 0.0037 0.14 12.2 1.3 2 23 318 340 318 340 0.96 4 26 0.032 1.2 9.2 0.8 2 23 346 368 345 368 0.94 5 26 0.0037 0.14 12.2 0.3 1 23 373 396 373 396 0.95 6 26 0.0043 0.17 12.0 0.9 2 23 399 421 399 421 0.95 7 26 0.039 1.5 9.0 4.2 3 21 430 448 429 449 0.96 8 26 0.006 0.23 11.5 2.0 1 23 500 523 500 523 0.95 9 26 0.098 3.8 7.7 0.1 2 23 551 573 550 573 0.96 10 26 0.00032 0.013 15.5 0.2 2 23 596 618 595 618 0.96 11 26 1.8e-05 0.00071 19.4 0.1 3 23 625 646 624 646 0.94 12 26 0.055 2.1 8.5 2.9 2 23 651 673 650 673 0.93 13 26 0.00049 0.019 14.9 4.3 1 23 678 701 678 701 0.97 14 26 6.1e-06 0.00024 20.9 5.2 1 23 705 728 705 728 0.97 15 26 0.00049 0.019 15.0 0.3 2 23 735 756 734 756 0.96 16 26 0.34 13 6.0 0.1 1 10 762 771 762 776 0.87 17 26 0.47 18 5.6 0.1 1 23 820 843 820 843 0.95 18 26 0.039 1.5 9.0 0.1 3 23 875 896 873 896 0.94 19 26 0.0077 0.3 11.2 0.7 2 23 919 940 919 941 0.94 20 26 0.0039 0.15 12.1 1.5 1 23 946 969 946 969 0.95 21 26 0.044 1.7 8.8 0.9 1 23 974 997 974 997 0.94 22 26 0.0058 0.22 11.6 1.0 2 23 1003 1025 1002 1025 0.92 23 26 0.00027 0.01 15.8 0.1 2 23 1033 1055 1032 1055 0.97 24 26 0.074 2.9 8.1 0.1 2 23 1062 1083 1061 1083 0.96 25 26 2.1e-07 8.2e-06 25.5 1.8 1 23 1089 1111 1089 1111 0.98 26 26 2.5e-05 0.00098 19.0 3.1 1 23 1117 1140 1117 1140 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAAATTGTGGTAAAAGAGACCCCAGGGTTGTGCCGGTGCTGCCTGTCCGAGGGGTGTTACAAGGATTTGAGCACCGAATACACTTGGATGGAAGAACAAGAAATTTATGCCGATATGCTATTGGAATGCTTTGATATTAGCATATCCCAACACATGGAAGGGCCCAATGGGCCAAACCGGCTGATCTGCGAGGTGTGCATCACACGGCTACGCGATGCTTGTAACTTCAAGAAGCAAGTCCTGGAGTCGGAGAAGAAGTTTGTTGACATGGTGGGGAGAGGGGAGTTCAAGGCTAGAGCGATAGCATACACGGAGCCTATGAAGTCAGAAATGATGTTAGACCTGCAGACAGTCGAGGAAACGGAAGTAGAATACCTAGATGATGACATGGATTATGATGATGGCAGCAAAGAGGACCCAGAACCGACAGTTTCAGAAGACGTAACAGTAACAGCATTAGCCGTTAAGGGCAAACGGGGACGGCCCAAAAAGACCCTAGTCAAACCGGAGAAGAAAAAGCCCAAATCGGAGGAGAAACCCAAAACCAAGATTGCTAAAGATGAAGGCCCGTACGAGCACTGCACATCTGTGCGGAGACGGAAAAATTTGCAAACTCTGTTCAACAACACCACGATATTGCCTTTCAAATGGCGCGGAAAGTACCAGTGCTTTTATTGCGGCTTGACGTACTCCGAATACCCTGAGTTTAGGAAACATACGAAATCCCACGGCCTGTGCAGCACGAGCGATAACTCTTTAAAACTCATCAAGGGAAACCATATAGAATTAAAAATCGACATATCGGAAATCGAGTGCGAAGTCTGTTACGAACCGTTCCCAAATTTCAACGAAATAATCGACCATTTGACAGGCAAGCACGGTTTAGAATACGATAAAACTGTAGACACACCATTCCAAGAATACAGGCTGGCTGACAATAGATGCCATTTATGCGAGCAACAGTTCACGTATTTCGGGAATCTAATAACACACACTAATATTGCACATCCGAAAAACAACTTAATTTGCGATAATTGTGGGTTAAAGTTTAACAAGAAGAGAGACTTGGCTTTTCATTTAAGAAATTACCATAGAGATGGAGGATATCGTTGCGAAGAGTGCTCAGAGGTCTTCCCTACTAGTTTGCTTTTGACTGGACATAAGAATAATTTCCATTTTCGAAGATGCAAGCTATGCGATGCACGTTTTCCATCTTACACACTATTACAGAAGCATAAAGAACGCGACCATCCAGACGACGGGAGTCAAAGTCTCTGCCACTATTGTTCTAAACAATGCAAAAGTACAGCCAGCTTGAAACAACATTTGAGGAACTGCAAGACGAAAAATTTTAAAGTGACCATTCCAGCGTTCCCGGAAGAAACCGTGCAGCCGAAGAAGAAAAGAGACATAATGCAAATTAGAAAGAACATCCAATGCATTTTGAATATGTCGACGGCGATACCGTTCAGGTTTTTTTCGAGATTCTCCTGTTTCCATTGCTCGAAAAACTTCGTCGAATTTGACGATCTGAAATCACACGTCGTGACCGAACATCCCGTTTGCGATTTGAAAGATAAAAGCATGAAGAAATGCAAAGGCGAACGGATAACAGTCAAAATTGATATTTCTGCGTTGTCCTGCAAATTGTGTTACGAGCGTTTGGATAATTTGGATGATTTAATAGATCATTTGATTACCAAACACAACGCGTCATACGACAAATCTATAACGGAGTGTTTCGATGCGTTCAAGATAATCAAAGACAACATACCTTGTAACATTTGCTCTAACGTTTTCCGATATTTCAGCAGTCTTTTACGGCATATAAACTCTGAACACAGCAACAATAATAAGATTTGCGATTATTGTGGGCGTAGTTTTAAAAACGTTGCCAATTTGAATGTACATATTACTTACGCTCATACGGGAGCTTGCGAATGCGAAGTATGCGGTGTGAAATATAAAAACCAGTGGTGTTTAGGGCGGCACAAGGCAAAAAGTCACAACGCTAAGGATTTCCAATGCAGTAAATGCGACGAGCGTTTCCAATCACAATATCATAAACAAAAACACATGATCAAAGCGCACGAAATTGGACACAAGTGTACGTATTGTGGGAAAATGTTCACCAGAAACTCTTTCATGAAAGATCATATAAGACGGACTcatttgaaggaaaaaaatGTTCCATGCTCGGTTTGCAATGAGAAGTTCTTTGACAATTATCTGTTGAGGCTGCACATGGTTAAGCATAAGGGTGAGAGGAATTTTAGCTGTGAAGTTTGTGGGAAAGCTTTCCTGAGACGGAGTGCGAAATTGTGCACAATGGAGGACAAATGTAAGAAAACAGAGATGGTGCGTAAACTGTTAGCGAAACGACGAAACGTCGAGTACGTTTTGGAGTACAGTAACGCTACACCCTTCATGTGGTACAAGGGGAAGTATAGGTGCTTCTATTGCGCAGAACCTATGAAAGACCCTGTCACTCTGAGGGAGCATACGGCCGTGATGCACCAAACTTCTAATTTGGAGCTAGTAGTTTTTGACAGAACGAAAAACAATAGGAACAGAGACGCGGCAGTCAAAATTGACGTGACAGATATATGCTGTAAACTTTGCCCGCAAGCTGTAAACAGTTTAGAACAACTAATCAACCATTTGATAATAGCTCATGACGCTGAATACGATGTGAGCGTTCCGAACTGTCTACTTCCCTTTAAACTCAATAAGGACCAACCCTCGTGTCCCATTTGCAATATCGATTTCGTTTTCTTCGAGTATCTTCTCCGGCATGCGAACAAACACCATTTGGCTCATGATTACATTTGTGATGTGTGTGGCACAAGCTTTCAAGGCGAGAATCATTTGAAAATGCACAACAGGTACTACCATAGAGAAGGGGGATATACTTGCGAACATTGTGGTATTAGTTTGGCTACGTTATCCAAAAAAACGCTACACGAAAAGAATGTGCACTTGATGAATTTGTCGACTTGTCCTCATTGTCCGGAAACTTTTAAAAGCCCGTATTTCAAAAAGCTTCACTTGGCGAACGTGCATGGCGTCGAggagttgaaaataaaatgcCCGTATTGCCCCAAAGTTTATCCCCAAGAAAGTATAATGTCCCGTCATATGAGAAGGGTGCATTTGAGAGAGAAAAATGTGGAGTGCCAAGTTTGTGGGGACAAATTCTTCGGCCCGTACGACGTGAAACTACACATGCTAAAACATAATGGGGATAAAAAATTCGTTTGCTCTGTTTGTGGAAAAAAATTCTCGAAGAAAAGCAATTTGAATTCGCACACTTTGACTCATACGGGACAGAAGAAGTACATTTGCACCATTTGTGGGAAGGAGTTCGCTCATAGGCCAAATCTGAGGATACATTTCAGATCGTGTCATCCTCAATATGTTACTGAGCAAGGCATTAGTGTTCTTGATGATATAGATGATGGGGAGCTGGTAGAAATTACTAGATTAGAATTGGACAGGGAACTTGAACCGGTAGAGGAAACTGTTTAA
- Protein Sequence
- MEFDEIVVKETPGLCRCCLSEGCYKDLSTEYTWMEEQEIYADMLLECFDISISQHMEGPNGPNRLICEVCITRLRDACNFKKQVLESEKKFVDMVGRGEFKARAIAYTEPMKSEMMLDLQTVEETEVEYLDDDMDYDDGSKEDPEPTVSEDVTVTALAVKGKRGRPKKTLVKPEKKKPKSEEKPKTKIAKDEGPYEHCTSVRRRKNLQTLFNNTTILPFKWRGKYQCFYCGLTYSEYPEFRKHTKSHGLCSTSDNSLKLIKGNHIELKIDISEIECEVCYEPFPNFNEIIDHLTGKHGLEYDKTVDTPFQEYRLADNRCHLCEQQFTYFGNLITHTNIAHPKNNLICDNCGLKFNKKRDLAFHLRNYHRDGGYRCEECSEVFPTSLLLTGHKNNFHFRRCKLCDARFPSYTLLQKHKERDHPDDGSQSLCHYCSKQCKSTASLKQHLRNCKTKNFKVTIPAFPEETVQPKKKRDIMQIRKNIQCILNMSTAIPFRFFSRFSCFHCSKNFVEFDDLKSHVVTEHPVCDLKDKSMKKCKGERITVKIDISALSCKLCYERLDNLDDLIDHLITKHNASYDKSITECFDAFKIIKDNIPCNICSNVFRYFSSLLRHINSEHSNNNKICDYCGRSFKNVANLNVHITYAHTGACECEVCGVKYKNQWCLGRHKAKSHNAKDFQCSKCDERFQSQYHKQKHMIKAHEIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRLHMVKHKGERNFSCEVCGKAFLRRSAKLCTMEDKCKKTEMVRKLLAKRRNVEYVLEYSNATPFMWYKGKYRCFYCAEPMKDPVTLREHTAVMHQTSNLELVVFDRTKNNRNRDAAVKIDVTDICCKLCPQAVNSLEQLINHLIIAHDAEYDVSVPNCLLPFKLNKDQPSCPICNIDFVFFEYLLRHANKHHLAHDYICDVCGTSFQGENHLKMHNRYYHREGGYTCEHCGISLATLSKKTLHEKNVHLMNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECQVCGDKFFGPYDVKLHMLKHNGDKKFVCSVCGKKFSKKSNLNSHTLTHTGQKKYICTICGKEFAHRPNLRIHFRSCHPQYVTEQGISVLDDIDDGELVEITRLELDRELEPVEETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -