Mhyp012160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Maniola hyperantus
Gene Symbol
-
Assembly
GCA_902806685.1
Location
NC:5974471-5986803[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0025 0.096 12.7 5.7 1 23 29 51 29 51 0.98
2 20 2.7e-05 0.001 18.9 2.0 1 23 57 79 57 79 0.97
3 20 2.5e-06 9.7e-05 22.1 2.0 1 23 85 107 85 107 0.98
4 20 6.5e-05 0.0025 17.7 0.7 1 23 113 135 113 135 0.99
5 20 2e-06 7.9e-05 22.4 2.5 1 23 141 163 141 163 0.99
6 20 4.5e-05 0.0017 18.2 1.1 1 23 169 191 169 191 0.99
7 20 1.3e-08 4.9e-07 29.4 2.6 1 23 197 219 197 219 0.99
8 20 8.9e-07 3.4e-05 23.6 3.2 1 23 225 247 225 247 0.99
9 20 6.3e-06 0.00024 20.9 2.2 1 23 253 275 253 275 0.99
10 20 6e-05 0.0023 17.8 1.6 1 23 317 339 317 339 0.98
11 20 0.0076 0.29 11.2 2.1 1 23 345 367 345 367 0.98
12 20 6.7e-05 0.0026 17.7 4.0 1 23 373 395 373 395 0.99
13 20 2.6e-08 9.9e-07 28.4 1.5 1 23 401 423 401 423 0.99
14 20 1.1e-06 4.3e-05 23.3 3.1 1 23 429 451 429 451 0.98
15 20 0.0035 0.13 12.3 4.9 1 23 497 519 497 519 0.97
16 20 0.0039 0.15 12.1 7.2 1 23 525 547 525 547 0.98
17 20 0.00077 0.03 14.3 7.6 1 23 553 575 553 575 0.96
18 20 0.0015 0.058 13.4 0.1 1 23 581 603 581 603 0.97
19 20 7.3e-05 0.0028 17.5 0.4 1 23 609 631 609 631 0.98
20 20 0.0022 0.083 12.9 0.7 1 23 650 672 650 672 0.97

Sequence Information

Coding Sequence
ATGTCAAGCTGTGCCTGCGTTCCCGTGACGTTCTCCCCCCCAGCGCCGCCGCGGCGCGGGAGggggaagaagaagaagaagctgcACTATTGCCACATCTGCGACTACACGTGCAAGTACAGGAGCGTGCTGGCCGTGCACGCGCGCACGCACTCCGGCGAGAAGCCCTTCGCGTGCGACACGTGCCCCTTGTCCTTCAAGACCATGAGCCATCTGAGGTCCCACGCGAAGACGCACACCGGGGTAAAGCCGCACGTCTGTCAACTTTGCCCCGCCAAATTCGTGCGCAGGAGCTATCTAACCAaccacatgaggactcacaccgGTGAGAAACCATACACTTGTGACATATGTCTCGCCAGATTCCCGAAAAGAAACAGCTTGACCGACCACATGAAGAcgcacactggcgaaaaaccgtATTCGTGTGATATATGCGAGCTTAGATTTTCACAAAAATGCAATTTAAACGACCACATaaggactcacactggtgagAAGCCCTATGAATGTAATATGTGTCAAGCCAgatttaccaaaaaaaatagtttgtccGGTCACATGATGACTCACACTGGAGAGAAGCCGTTCACGTGTGACGTATGCAAGAAGGAATTCCGACGGAAGAGTAATCTAACCGAGCACATGAGGACGCACACTGGTGAGAAACCGTACTCGTGCGAACTGTGCCAGAGAGTGTTCCGACACTCGAGTAAACTGACGGAGCATATGCGGATGCACACTGGTGACAAACCTTTCACCTGTACTGTTTGTCGTACGAATTTTGCACAAAAAAGATATTTGACGGCTCACATGAAGACTCACGGTAAAAAGAAGGAAAGTTGTCTTCCTGTCGAGAGCAAGTTCCCGCCGCCTCGAGGCGAGCCGAAGACGAGGCAGAAGGGTTCCTCGATACACCACCTGCTGACCCCCTCCGCTGAGAGACCCTTCTCTTGCCAACTCTGCGCCTCTAACTTCAAAACCCCGAGCACTCTCAAGTCCCACATGAAGACGCACACTGGTGATAAACCCTATTCGTGTGCTCTATGCCATGTTAAACTTGCACAAAAATGCAATTTAATCGATCACTTGATGACGCACACTGGTGAGAAACCCTATAAATGTAATCTGTGCAAAGCAAAATTCGCCAAAAAACATAGTTTATCCAGTCACATGATGACTCACACTGGTGACAAACCGTTCACGTGTGACGTATGCCAGAAAGAATTCCGACGGAAGGGTAACCTGACGGAGCACATGCGGACGCACACTGCCGAGAAACCGTACTCGTGCGAACCGTGTCACAGAGTGTTTAGTCACTGGAGTGAACTGACGAGGCATATCAGGACGCACACTGGCGACAAGTCGGCTTTCACTTGCCTCCTCGAAGTGAGGCAGTTCCCGCTTCGAGGCAAACCTGACACGCGCCAGTTCCCTCCGCCTCCGCGCAAGGCGAAGAAGAGGCAAAAGAGCTCGCTCATCACCCTGCACAGCTGCGGCGTGTGCGACTACACCTGCCGCCGCCGCAGCGGCCTGCTGTCGCACCTGCACATACACTCCGACGAGCGCCCCTTCTGCTGCCACCTCTGCCCCTCCAAGTTCAAGACCATGAGCACCCTAAAGTACCACATCAAGACCCACACGGGCGACAAACCGCACGCTTGCCAACACTGCGCACGCAAATTCGCACGCAGAACCCATCTCAACTACCACATGCGTTCCCACTCCGGTCACAAAGCTTACGCGTGTGACCTTTGTCCAGTCAGCTACAAAGCTCGAGCCAGCCTGGTGACCCACATGAAGCTGCACGCGGGCGAGGGCCCGTTCTCCTGCGACATTTGCTACAAGGAGTTCAAACTCAAGAGCAGCATAGCAGCCCACATGAAGGTTCACGATGGAGAGAAGCCCGACACGTATGACCCTCAGAGTTCCACTGCCAAGACGCTATTCTGCTGTGCCGTTTGTGATGCCAACTTTACGGAGATTAAATATCTAACCGCTCACGTGCGGATGCACCGTGGAAAGAAGAAGAATGCTGATTAA
Protein Sequence
MSSCACVPVTFSPPAPPRRGRGKKKKKLHYCHICDYTCKYRSVLAVHARTHSGEKPFACDTCPLSFKTMSHLRSHAKTHTGVKPHVCQLCPAKFVRRSYLTNHMRTHTGEKPYTCDICLARFPKRNSLTDHMKTHTGEKPYSCDICELRFSQKCNLNDHIRTHTGEKPYECNMCQARFTKKNSLSGHMMTHTGEKPFTCDVCKKEFRRKSNLTEHMRTHTGEKPYSCELCQRVFRHSSKLTEHMRMHTGDKPFTCTVCRTNFAQKRYLTAHMKTHGKKKESCLPVESKFPPPRGEPKTRQKGSSIHHLLTPSAERPFSCQLCASNFKTPSTLKSHMKTHTGDKPYSCALCHVKLAQKCNLIDHLMTHTGEKPYKCNLCKAKFAKKHSLSSHMMTHTGDKPFTCDVCQKEFRRKGNLTEHMRTHTAEKPYSCEPCHRVFSHWSELTRHIRTHTGDKSAFTCLLEVRQFPLRGKPDTRQFPPPPRKAKKRQKSSLITLHSCGVCDYTCRRRSGLLSHLHIHSDERPFCCHLCPSKFKTMSTLKYHIKTHTGDKPHACQHCARKFARRTHLNYHMRSHSGHKAYACDLCPVSYKARASLVTHMKLHAGEGPFSCDICYKEFKLKSSIAAHMKVHDGEKPDTYDPQSSTAKTLFCCAVCDANFTEIKYLTAHVRMHRGKKKNAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-