Mcon012287.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01084684.1:2-1394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.2e-05 0.0058 17.6 1.6 2 23 117 139 116 139 0.92 2 10 0.1 9.7 7.5 1.5 1 23 145 167 145 167 0.98 3 10 3.3 3.2e+02 2.7 2.5 1 23 173 196 173 196 0.90 4 10 0.00034 0.032 15.3 0.1 1 23 201 223 201 223 0.98 5 10 0.00046 0.044 14.8 1.6 2 23 240 261 239 261 0.97 6 10 1.8e-05 0.0017 19.3 1.4 3 23 270 290 269 290 0.97 7 10 0.00014 0.013 16.5 1.1 1 23 296 318 296 318 0.96 8 10 7.2e-06 0.00068 20.5 5.5 1 23 324 346 324 346 0.98 9 10 4.2e-05 0.004 18.1 0.6 3 23 354 374 352 374 0.96 10 10 5.6e-06 0.00053 20.9 1.8 1 23 380 403 380 403 0.98
Sequence Information
- Coding Sequence
- AATGATGGCTTTGAGAATAAGTACACCAATGCAATAGAAAATGATTTTAAGATCCAATATTCAAACagaaattttaaacataaagaaaaattgAAGAAAGAAATAGAACACAATTCTAAACCACAATTGGACAATCAAGTTTATTCTGGGGATgacataaacataataaattatagtactgTGAACACCTGCATACCGCATAAACATACAAAATCCATTGACAGAACAATCCCACTGAAACTATTGGATACTACGGAATATTCTGAAGATTACATAACTAAACAAATTAACAGGCTAAGTACTGTACCTGTGCAATGCCTAAAAATGACATGGATGGATTACGAGTGGAAGTGTTCTCACTGTGGCACATTTTTCTCAAATATTGACGAACTACAGAAACATTCAATGCTGTACCACAACACCTGTAATGCTTACCAATGCACCGATTGTAAAATAAAGAAGCAACGTCTCAATGCTTTCATCAAACACGTCAGATCACACAGGAAATACTTACATTATTCATGCTACAAATGCTTTGAGAAGTTCCCTAAAATTATGGAAACAAGGCAACATAAGACAAGAATGCATGAGAACTCCAAATATGTTTGCTTGGGATGCAACACTCCTTTTGCTAGTAAGACTGAAATGGAGGAACACGTCAATAAGCATTATAATATTCTATGGAGACAGAAAACATTTATCAGTAGTGACAATTTAACATGCAGTACGTGTAATAAGGTTTGTGCAAGTGTTACCGCTTTACGGAACCACCTCAATAGgcacaaagaaaagaaaagagacCGCATATGTGACCGATGTGGCAAATGTTTTGACAGTGAACCTAGTTTAAGAACGCACATGGATACACATAccgaaagagttttatataattgcGAAATTTGTAAAACTACATTCAAAACTGTGTACTCACTACGGTACCACGCTAGCATCCACTCTGGAATCAAACCGTTTACTTGTGACGTTTGTAACAAATGTTTTAGAACTAGAAGTCAAATTACAAATCACATGAAGTTCCATACGGACTACTTTCCTCTGGCTTGCTCGGTTTGCAACAAAAAGTTTCGAATAGAGAACAATTTACAGAATCATATGCTACAACATACTGGAGAGAAACCGTTTTCCTGTGACATTTGTCCTAGAGACTTTACTAACATGTCCAACCGTAACAAACACATGAGACGGAGACATGGTATTGAAATGGCTAAGAGGAGACAGCCTATTATAAAGCAACAAACATCTGATGACCCAACTGCCTCCGTCCTGCTTACTGGAGAAACTACATCGGATCGAAACAAAATGGATGAATGGAAGAACAAAATCAGGGGACAGGAAAAAAGTCAAACggcaaataacaaaattaaaacagagTGA
- Protein Sequence
- NDGFENKYTNAIENDFKIQYSNRNFKHKEKLKKEIEHNSKPQLDNQVYSGDDINIINYSTVNTCIPHKHTKSIDRTIPLKLLDTTEYSEDYITKQINRLSTVPVQCLKMTWMDYEWKCSHCGTFFSNIDELQKHSMLYHNTCNAYQCTDCKIKKQRLNAFIKHVRSHRKYLHYSCYKCFEKFPKIMETRQHKTRMHENSKYVCLGCNTPFASKTEMEEHVNKHYNILWRQKTFISSDNLTCSTCNKVCASVTALRNHLNRHKEKKRDRICDRCGKCFDSEPSLRTHMDTHTERVLYNCEICKTTFKTVYSLRYHASIHSGIKPFTCDVCNKCFRTRSQITNHMKFHTDYFPLACSVCNKKFRIENNLQNHMLQHTGEKPFSCDICPRDFTNMSNRNKHMRRRHGIEMAKRRQPIIKQQTSDDPTASVLLTGETTSDRNKMDEWKNKIRGQEKSQTANNKIKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -