Mcon001170.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01004865.1:110742-126668[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-07 6.1e-05 23.2 0.0 2 40 102 139 101 143 0.89 2 2 4.7 1.8e+03 -0.7 0.0 2 15 405 418 404 420 0.83
Sequence Information
- Coding Sequence
- ATGCATGTGAACAATTGGTCCACCACTAGCACGCCAGTCGCGTCGCCGGCGCAGTATTTGGGCATTTGCGCATGCGCCGGTCTTCCGCCAATTACACCGCGAGTGGCACTTCCAATGAACCGAGCCATGCCGGGCACGTGCATCCAAGCTAACGCCACAGGAACTCAACATTATGACATTTTGGTTGGAATTGCTTTAGTGAAACGTAAAGTGCACAAAATAAACTTAGTGAGTGAACTTATTTCTCCAATTTTCTGcATGCCAAGACCAAAAAATAAGGAGCGGAAAAtaggaaaacacaaaaaagaggACATGATGTCAGCTTTACGAATGGTACAAACTGGTTACTCCATTAGGACGGCGGCAACAACCTGTAAAATTCCGTACCCTACATTACGCCGTTACGTGAAAAACAATCGTGAACATGGTGATAACATATCACTTGTACCTAGAAACAATAATCAACAGGATTCGACTCCTCTAGAAACACGTCGTTCAAGTTATGATCCCGTTGTTACCCCTGATCGAGAAAGTCCATCTATACTATCGCAAGAACATCATAGTTACTACGAAAACGTGACACCGCCAAAGAAAGTAGTTGAAGCATGCAAAGATGAAAATCATCAACCAAAGTCCGAGCATATTATCACTCCAGTAATGTTCCGTCCTCCGCTAAAGGCTGGCCCTCGTACCAACAAACGAAAAGGTAGAAAACTGGGCAAAAGCATGATAGCAACGGACACGCCAGAAAAGGAAAGAATAGCTGAGGAACGTACTGCTGCATTAAATAGAAAAGGTCTGCATAAAAGAAAAGTTCTACAAGAATGTGGTAATGAAATGCTTCCATCGACAAgtaaaattagaaaaacaccAAATAAGaggaacaaaaaaagaagagtTGTACTGGACGAAGACAGTGAAACGAGTGAAGAGGAAGATATAATTCTTGAAAGTGAAACAGACCTAGAATCGGATGAGGAAGATGAGCAAATTATAGATGAAGATTTTGCTGATTTACAGCCGCAGGCGCAGCCCAACAGGCTAGCGCTGACCGAGAATATTCAAGTGACGTACTACGTGATCCGCACGGCGCTGCTGGGCTCGTGGTTGTGGGCGGCGCTGCTGACGTGTGCGCCCATCGTCGGCGTGGGGCTGTACTACAACGACCACGACCACGAGCAGAAGTGCCTGCGCTACCGCCTTGCTAAGAAGCCCGCCGACCTCGCCTACGCCATCTTCTACGTCGCTTTCGGCACGCTGCTCTGCATCGTGCTGGTGTACTGCAACCTGGCGGTAATCCGCGCGCTGTACGCCATCAGCGCGCCGCGCGGCTCGGCGCCCGTGGTGCGGCGCGTCAGCAAGTCCAGCTGTCGCCAGCGCGCGCGCGCCGGGCCCGCGCCGCCCACGCACCACAACGCCGCCACCGCCGAGGAGGTCGCCTTCAGCCGCCTCATGGCCACGCTCTCCGTGCTCTTCATGATCTGCTGGATGCCGCAGATGGCGACGTCGGCGCTGTTCCTGGCACGCGGCGACAGGAAGTGGCCGTGGCTGAACATGCTGTCCACGCTGTCAGACCTGCTGATGCTGCTGAACTACGTGCTCAACCCCATCCTGTACGTGCTCATGCGCCAGCGCCGCCATCTCTCGCTCACCAACCTCTGCCACTCCATCGCTCATTGCTTCAAGCGGAGTCACAAAACATCGACGGAGTCCATGTCGATGAAGACGTCGTGCTGCCCGCAGGAGACGCTGGTGGTGAGCGACGGCTCGACAGGCGCGGAGCTGCGGCCTCTGCGCGCGCCGGCCGGGTACGACTCGCGCGCGCTGGACTGA
- Protein Sequence
- MHVNNWSTTSTPVASPAQYLGICACAGLPPITPRVALPMNRAMPGTCIQANATGTQHYDILVGIALVKRKVHKINLVSELISPIFCMPRPKNKERKIGKHKKEDMMSALRMVQTGYSIRTAATTCKIPYPTLRRYVKNNREHGDNISLVPRNNNQQDSTPLETRRSSYDPVVTPDRESPSILSQEHHSYYENVTPPKKVVEACKDENHQPKSEHIITPVMFRPPLKAGPRTNKRKGRKLGKSMIATDTPEKERIAEERTAALNRKGLHKRKVLQECGNEMLPSTSKIRKTPNKRNKKRRVVLDEDSETSEEEDIILESETDLESDEEDEQIIDEDFADLQPQAQPNRLALTENIQVTYYVIRTALLGSWLWAALLTCAPIVGVGLYYNDHDHEQKCLRYRLAKKPADLAYAIFYVAFGTLLCIVLVYCNLAVIRALYAISAPRGSAPVVRRVSKSSCRQRARAGPAPPTHHNAATAEEVAFSRLMATLSVLFMICWMPQMATSALFLARGDRKWPWLNMLSTLSDLLMLLNYVLNPILYVLMRQRRHLSLTNLCHSIAHCFKRSHKTSTESMSMKTSCCPQETLVVSDGSTGAELRPLRAPAGYDSRALD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -