Mcon021817.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01005120.1:299800-301356[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 4.5e-05 23.7 0.0 5 29 1 25 1 37 0.84 2 2 5.1 2e+03 -0.8 0.0 7 18 118 129 115 130 0.88
Sequence Information
- Coding Sequence
- ATGAAATCTGCGATAGACGAAGTTTTGAATAAAACCTTATCTATCAGAAAGGCTGCgcaaaaatatggcgtcaaaccAACTATGCTTGAAAGTCGCTTGACGAAGTTATATAAACAAGCAGCTACTGAAGACAGACATAGTAAGACGTTGGTGTATTTGGAGGCAAAATTGAAAGTGGCATTTAACGATTGGCATGTGAATAACCCGGGCAAAACTCTAAACATATACAATATACCGAAGCTTGCCAAAGTAGCCTATTTTGAATCGTTCAGTGGGAGAAATATAACACGTGCCTTTGAGGAGACTGGAATCTGGCCATTTAATAAGCTAGCCTTCGGAGACGACGACTTTGCAGCTGTAAGCGTATACCAATCCGGGTCCACGTCAGCTCCAGAAGAGATCGACGAGATAGGTAATGTTGAAGATGTGGAACAACAAGATTTACCACCAGGGTTGGCCCCTACATCAGCTTCTTTTCCGCCACAGTCAGAATCCGCACAAGGTGAGCAGTCTATTTCAACAGCGAGTCAAGGTGCCAATGTATCGGAAATGGAGCTTACTCAAGAAGATCTCCTAGAGAGCTTAGTTCCTGTTTCACCTTCCTTACATAGATCTACAACTACACCGGCGACTTTACCTGCTGGAGGACTAATAACTCCAGAAGTTATCCGGCTTTACCCTATAGTAGACAGAACTGAGTCTAAAAAGTCCAGAAAAGGGAAACAGCAAGGAAAGTAA
- Protein Sequence
- MKSAIDEVLNKTLSIRKAAQKYGVKPTMLESRLTKLYKQAATEDRHSKTLVYLEAKLKVAFNDWHVNNPGKTLNIYNIPKLAKVAYFESFSGRNITRAFEETGIWPFNKLAFGDDDFAAVSVYQSGSTSAPEEIDEIGNVEDVEQQDLPPGLAPTSASFPPQSESAQGEQSISTASQGANVSEMELTQEDLLESLVPVSPSLHRSTTTPATLPAGGLITPEVIRLYPIVDRTESKKSRKGKQQGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657103;
- 90% Identity
- iTF_00657103;
- 80% Identity
- -