Mcon011529.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- clz9
- Assembly
- GCA_002192655.2
- Location
- NDFZ01082237.1:1-1741[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-11 1.3e-08 35.0 0.0 1 37 16 53 16 60 0.89 2 2 9.8 3.9e+03 -1.7 0.0 7 18 297 308 294 309 0.88
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATGTGACAAAGGGGACGAGAACGGGACAAGTAGACGAAGATAGCATGAAATCTGCGATAGACGAAGTTTTGAATAAAACCTTATCTATCAGAAAGGCTGCGcaaaaatatggcatcaaaccAACTACGCTCGAAAGTCGCTTGACGAAGTTACATAAACAAGCAGCTACTGAAGACAGACATAGTAAGGTACGCGTTATCAGTTTCAAATACTCTTCAAACCAAGTGTTTTCTGCAGAAGAAGAGGCTCATTTAAATACGTACATTGAAATGCTCCAAAATGCACTACGGATTGACGATTGTCCAAGAAAGGATTGGGTGGAGAGTTTTCGCAAGCGTTGCACAAATTTAAGCCTCAGAAAACCAGAAAACACCAGTGCCGCAAGGGTTCATTTTAAAGACCATTTTATGGACGGTGCTCCGGAAGGTAGTCTGGGAATGGCAACAAGGAGTGGTTGGATAAATACCACTATATTTTTGGAGGTGTTGAAACATATCCAGAAGAAAACGTTGTGCTCAAAAGATAACCCTATCTTGCTACTGGTTGATAACCATGAAAGCCACGTCACAATAGAAGCAGTAGACTATGCTCGTGACAATGGCATAGTTTACCTTTCGTTCCCACCGCATACAACTCACCGTCTTCAGCCCTTAGACGTTGGTGTATTTGGACCTTTCAAGGCAAAATTGAAAGTGGCATTTAACGATTGGCATGTGAATAACCCGGGCAAAACTCTAAACATATACAATATACCGAAGCTTGCCAAAGTAGCCTATTTTGAATCGTTCAGTGGGAGAAATACGAGTATAACACGTGCCTTTGAGAAGACTGGAATCTGGCCATTTAATAAGCTAGCCTTCGGAGACGACGACTTTGCAGCTGTAAGCGTATACCAATCCGGGTCCACGTCAGCTCCAGAAGAGATCGACGAGATAAGTAATGTTGAAGATGTGGAACAACAAGATTTACCACCAGGGTTGGCCCCTACATCAGCGTCTTTTCCGCCACAGTCAGAATCCGCACAAGGTGAGCAGTCTATTTCAACAGCGAGTCAAAGTGCCAATGTATCGGAAACGGAGTTTACTCAAGAAGATCTCCTAGAGAGCTTAGTTCCTGTTTCACCTTCCTTACATAGATCTAAAACTCCACCGGCGACTTTACCTGCTGGAGGACTAATAACTCCAGAAGTTATCCCGCCTTACCCTATAGTAGACAGAACTGAGTCTAAAAAGTCGAGAAAAGGGAAACAGCAAGGAAAGTCGAGAATATATACAGAT
- Protein Sequence
- MPRKYVTKGTRTGQVDEDSMKSAIDEVLNKTLSIRKAAQKYGIKPTTLESRLTKLHKQAATEDRHSKVRVISFKYSSNQVFSAEEEAHLNTYIEMLQNALRIDDCPRKDWVESFRKRCTNLSLRKPENTSAARVHFKDHFMDGAPEGSLGMATRSGWINTTIFLEVLKHIQKKTLCSKDNPILLLVDNHESHVTIEAVDYARDNGIVYLSFPPHTTHRLQPLDVGVFGPFKAKLKVAFNDWHVNNPGKTLNIYNIPKLAKVAYFESFSGRNTSITRAFEKTGIWPFNKLAFGDDDFAAVSVYQSGSTSAPEEIDEISNVEDVEQQDLPPGLAPTSASFPPQSESAQGEQSISTASQSANVSETEFTQEDLLESLVPVSPSLHRSKTPPATLPAGGLITPEVIPPYPIVDRTESKKSRKGKQQGKSRIYTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -