Mcon014166.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01005332.1:70729-72081[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-07 0.00016 21.9 0.0 10 39 2 32 1 36 0.86 2 2 6.6e-06 0.0026 18.0 0.0 3 38 116 151 114 154 0.82
Sequence Information
- Coding Sequence
- ATGGCGGCAGTTGTTCAGGATCACATGACACAGCAGTCTGCTGCAGATCTGTTTGGCATTCCTAGGCAGACATTAGCTGGTCACCTGTTAAAAGGAAGCATCGTGAAACGAATGGGCCGACATTCTATAATGAACGATGCTCATGAAGACTTCCTCGTGAGCAGGTTGATAAAACTCGCCAACAGCTCTAAATTGTCACCGTTAGACTTAGAAGCAACGAAGACGGACGCCTTTTTGCCCGGGGCAACGGTGGAAGTTACCCAGGTTAAAGCGGCAGTGCGGTCTGCAGCAGGTCCTGATGGCTTTCCTAGGCAACAAGGCGGTAAAAAACCTAGGTGGACGAAAGGAGATCTACAAGCAGCCCTGAAACTCATAAGGGAAGAACACTGTCCCGCGCCATTTGCAGCTCTGCACTATGGCATCCCCACAAAAACCCTGCAACGGCACATGCGAAAGGAATTCTACTAA
- Protein Sequence
- MAAVVQDHMTQQSAADLFGIPRQTLAGHLLKGSIVKRMGRHSIMNDAHEDFLVSRLIKLANSSKLSPLDLEATKTDAFLPGATVEVTQVKAAVRSAAGPDGFPRQQGGKKPRWTKGDLQAALKLIREEHCPAPFAALHYGIPTKTLQRHMRKEFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -