Mcon014165.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01005332.1:62542-64638[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-10 3.1e-07 30.6 0.1 11 44 3 36 2 37 0.87 2 2 6.4e-07 0.00025 21.2 0.0 1 45 103 147 103 147 0.94
Sequence Information
- Coding Sequence
- ATGACCGCTGTTAAAGGGGGACATCTGTCACAGAGAGCTGCTGCAAAACGATACGGAGTTCCAAAAACTACCCTTTTAGAACATTTGAAGTCAGGAAGCTCAGTGAAACAAATAGGACGAAAAGCCGTATTCAGCAACGTACAAGAGAAGCAACTCGTGGAAAGAATACAAAATCTTTCAAACAACGGAATGTCTTTTAACACAAAGTTAATTCGCAAACAAGCCTTTGAGTTTTGTCgagaaaacaatattaaacataCTTTTAACATCACTAAGGgttCGAACCTTGCAAAACAACCAATCTGGACAGAAAAAGACTTGCGTGAGGCTATGAAAGCCGTTCAATGGGGGACTATGACTAAGAAAGCTGCATCAGATTATTACGGAATCTCTATACCAGCTCTCAGCCACCATTTAAAAACGGGAAGCACAGTTAAACGAACGGGACGAAACCGCATACTGAATGAAGAACAAGAGAAAGAACTTGTGAATAGGATACTCAACCTTTGTGCTGGAGGTAAAAGATTTTCCCTCACTCCGAAGTTCATTCGTAGTCAAGCCTTCGAGTTTtgtgaagaaaattttattaagcATAATTTTAATTCCAATACGGGTCTTGCAGGTAACGATTGGTATAATGGGTTTATGAATCGGCACCCAGAGCTACCGATTGTAAGGCGCCGGTGGATTAAAGTAGCAGTAAACGGAGACGCCCCCGTCTCCGGTGGTggataa
- Protein Sequence
- MTAVKGGHLSQRAAAKRYGVPKTTLLEHLKSGSSVKQIGRKAVFSNVQEKQLVERIQNLSNNGMSFNTKLIRKQAFEFCRENNIKHTFNITKGSNLAKQPIWTEKDLREAMKAVQWGTMTKKAASDYYGISIPALSHHLKTGSTVKRTGRNRILNEEQEKELVNRILNLCAGGKRFSLTPKFIRSQAFEFCEENFIKHNFNSNTGLAGNDWYNGFMNRHPELPIVRRRWIKVAVNGDAPVSGGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -