Mcon000010.1
Basic Information
- Insect
- Mamestra configurata
- Gene Symbol
- -
- Assembly
- GCA_002192655.2
- Location
- NDFZ01004245.1:1-9053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.3e-12 2.1e-09 37.5 0.0 4 39 148 184 145 188 0.90 2 5 1.5e-11 5.9e-09 36.1 0.2 1 39 199 237 199 241 0.94 3 5 4.3e-08 1.7e-05 25.0 0.1 2 30 255 283 254 289 0.94 4 5 1.8e-06 0.0007 19.8 0.1 7 30 301 324 300 330 0.95 5 5 0.011 4.5 7.6 0.0 7 30 342 365 341 378 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAGTTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGATTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACACCGGTGTGTGTCAAGCAGGAGCGCGCCGACTCCCCCCCAGCTACTACGCTGGAGACGCTCGAGTCGGCTCCTCATAATGCTAAGAGTACGTCACTGTTGGACCGCCACATAGACTTTATGAACGTCACTGAAGTGCCTGACTCCACCGACTTCATGCCGCTGCTGGCTGTCAAGGATGAACCCTCGTCTGAAGGTGAACAACCACACCTTAGCGGAGAAGATACAAGCGACTCCTGCGGCCGGCAAGCGTCGCCCGCACCACGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAACGAGCCTTGGACGCTCTCAGGAATCACCAGATGAGCCTTACAAAGGCATCGGCAACGTACGGCATCCCGTCCACGACGCTATGGCAGCGCGCGCACCGTCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGGAGGACCTGCGAGGGGCTCTGCACGCGCTCAGGGCGGGCGCTATATCCGCTAACAAGGCTAGCAAGGCTTATGGCATCCCAAGCAGCACTCTGTACAAGATAGCTCGTCGTGAGGGTATCCGTCTATCGGCGCCGTTCAACGCAGCGCCCACATCCTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCGCTGGCGCTAGCTCCGTGCAGCGTGCTGCCACGCAATATGGCATACCCACAGGTAACTGTAGTAGTCTACCTCTGTGTGTTGTTCAACGCAGCGCCCACCTCCTGGCGCTCGCCTCCATCCGCGCTGGCGCTAGCTCCGTGCAGCGTGCTGCCACGCAATATGGCATACCCACAGGTAACTGTAGTAGTCTACCTCTGTGTGTTGTTCAACGCAGCGCCCACCTCCTGGCGCTCGCCTCCATCCGCGCTGGCGCTAGCTCCGGGCAGCGTGATGCCACGCAATATGGCATACCCACAGGTAACTGTAGTAGTCTACCTCTATGTGTTGTTCAACGCAGCGCCCATCTCCTGGCGCTCGCCTCCATCCGCGCTGGCGCTAGCTCCGGGCAGCGTGATGCCACGCAATAT
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPATTLETLESAPHNAKSTSLLDRHIDFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEEDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRAGASSVQRAATQYGIPTGNCSSLPLCVVQRSAHLLALASIRAGASSVQRAATQYGIPTGNCSSLPLCVVQRSAHLLALASIRAGASSGQRDATQYGIPTGNCSSLPLCVVQRSAHLLALASIRAGASSGQRDATQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -