Mbra026701.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:3378637-3392104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.077 6.4 8.2 1.6 1 23 209 232 209 232 0.98 2 13 0.0082 0.69 11.2 0.2 1 23 324 347 324 347 0.91 3 13 0.00066 0.055 14.7 0.1 1 22 386 407 386 407 0.96 4 13 6.6 5.5e+02 2.1 1.5 1 20 738 756 738 758 0.78 5 13 0.26 21 6.5 3.0 1 23 770 792 770 792 0.94 6 13 0.7 59 5.1 0.2 2 23 798 819 797 819 0.95 7 13 1.2 1e+02 4.4 0.7 1 23 842 863 842 863 0.94 8 13 0.012 1 10.7 0.3 2 23 946 967 945 967 0.96 9 13 5.8e-07 4.8e-05 24.3 2.7 1 23 973 995 973 995 0.99 10 13 0.00017 0.014 16.5 0.4 2 23 1001 1022 1000 1022 0.96 11 13 0.003 0.25 12.6 3.6 2 23 1029 1051 1028 1051 0.95 12 13 1.2 98 4.4 0.1 1 20 1058 1077 1058 1081 0.93 13 13 0.00015 0.013 16.7 0.7 3 23 1090 1111 1089 1111 0.97
Sequence Information
- Coding Sequence
- ATGGCGGATACATCCAGGAAAAGGTCGAGAAAGTCGAAATTGGTGCCTCGAGAGTACCCCGTAGACGATGAAAATGATCTTGAATTGCAGATGCGGGCAGCAAAAGTATCAAAAAGCACGAAACAGAAACCAAATAAGGTAAACAAACCGGAACCGCCTGCTTCAATCCCGGACCCAGACGCTTCGAAATCTGAAGAAGTATGTGACACAAGTGTACTGAGAAAAATCAACGCATCAGCTAAAGAAAGCATTGAAACGAAAGAAACATTACCTATAAAATTTACAGTAAACATTGAAGTAGAATCCTGTGATGACCACGACTATTTCGGTGAGAATCGTGGTCAGAAGTCTCCTTCATCAAGAATCGAAAATTCACTCGTGAAAAAAGATGCGAATCCAACACCTATACCCCTGACCCTAGAATTCATTCTCGAAGCAGCTGACAATCTGAACACATCAACAAATAAAGctgataatatattaaatacatACGTTAGAAACACAATAGGTTATAAGCATAAGCAAAAACTGATACAAAGCTCGCACGAGATGAAAATACAATCAACTTTAGAAGAATGGCGAAACTGGCAGTCCCGTAGTTTCCATAGAGAAGACCCATTATTCTACAAATGCTATGTCTGTACAAGATCTTATTGGTATCTATCAGAATTTCGCGACCACTTGTCAACAAGCCACGCAGATGATACTCTCTTAAATATCTCCCTGGAAAAGTATTTAATGCATGAAGCGAATTTGATAGCTTATCACAAAAAGCTTGTGGTAATTCGAGATATATACACGCCTGGACTTTGTTACCGTTGTGGTAGAGATTATCGCGCTCATGAAATATCAGCAAGATACCAAGAGAAATTTTACATGCAAGCGGGTTGTTCCAGGGACTTTTTTTGCTGTACTGGTCTGAGAGATCATTTCCCTTCGTGTACAATTTGTAATGTACAAGGGAAGCCGTTTAAATGTGATATCTGTAAGTCAAGATTTGATACTAATGATGAACTGGTTGGTCATCTGGTTTTGTCTCATTCCGTTCGGTCCGACGTACCAATAATGACCCGCTATGTCAACTGCAGGGTTTGTTTAGAGCGCTATGGGTGTAAATATCTACACAACTGCGTCGAAAAAAGTATAGGTCCTAACTTTGAATGCCCACACTGTTTAATAAGCTTCTCAAATGCTTTGACATTAGAATTACACATGCAAACTACAAGAAAACCGTACAAATGTGAAGTTTGTGGAGACGTGATGCCTTTCAACTGTATGAAGTATGACCATTTGTTGGTGCACACTGACAATTATATGATAGTTAAGAAATGCATGATTTGCGACGGGCTGAACGTTTTTGTGAGTAACGAGGATGCAAAAGCTCATTGGACTATGAAACATAAGGTTATGGATTTGAGGcgtcatatttattttcctaaaGTGTTCGTACCAGCGTCCTGCATATATCAAAGATTAGCAGAATTAGACTTGAAAGAACAGGAATCTTTTCTGGAAGCTCAAGAATCAGTATCAGAAGTACAAGAAGAGCTGCAAACGGAGACAGAAGAGTCACAATGGGGAGCAGAAGAGCAGGAATCGGGGCCAGAAGAGCAGGAATGGGGGGCAGAAGAGCAGGAGTCGGGGTCAGAAGATCAACAATGGGAGGTAgaagaagaaaatgttttgCTAGAAGAGCAAGGTTCGGACGCAGACGGAGCAATAATGTTATTGAACAATGAAGAAGATTCTATTTCAGCATGTCTACAAAAAACTTTGCAAGAAAAGTTAGATTCAGCTACAGAATGTACAATGGGGAATATTGTAGTAAAAGAAGAGCCAGAAGACTTCGAAAGCCCAAGACTTGTAATCAAAGAAGAACCATTAGAAGAAGTTGAAAACCAATTCTTTGAACAAGAAAACCAAACAGATAACATTGAAGACCAAATTACGGTCAAACAAGAAACcgtagaagaagaagaattagACGAATATGAAGGAGACCTCATCAAACTAAACTTCGATATAGAAGACTTATTAGTGAAAGAAGAAACAATACAATACGAAGAAGAAATTACAAATGAAAGCCAAGATTCAGAGTTGGATACAGAAGAATCTTTGTCGCAAACAGAAGAATTACAATCACAGACAGAAGATTCTATGCTTGAACCGGAAATTGTAATCACCGGAGAGCATAGAAAGAACAAGAAACACTATAAATGTACCACGTGTGGATTTCAGGcgacacataaattatacaagcAACATATAGAGTACGATTGCAGCAGGAACCCGGTTAAGCACCGACGCTACAATTGTACAAAATGTAACACAGAATTTGGttcaatgaaaaattatttagcTCATTTTGAACATCATGGCTACCAACATATGTCCTGTCCGGAATGCTTGAAGCAGTTAAATAATTACACTTATTTTGGACAACACATACAAGCTCATGTTAAACAGAATTTTGTTCGAGTCAAAATGATAACTTATGCAGGTGATGCGATGTCTAGACCGGATTATCAATGCAAGAAATGTTCTGAAAATGTAGATTTGACGGAGTTTTTTGATCATTGGGAGACTCATGTTAAGGCAAAACCGTCCCATCTGGTTAAGGTGATTTCTAAGCCAAAGAAAAAGGATATTCATGAGAACTTGCATGGGCAACTTCATGAGACCATCATAAAGGAGTGTGTTGcccaTCTGCATAAACAGCCCAAAGAGTGCATCCACTGTCATCGTATGTTCAAACGTACCAACGAGTGTAAGCGACATATTATAGAACATTTACTGGTCGACGCTTATAACCAGAAACACATATACAAGGAACTTAGGTGCCAGgTCTGTGATAGTGGGTTTCCAGCCTCGGATAAATACAAACAACACATGCGGGATCATGCATCTTTACCTGTTTACAAATGTGAATTGTGTGACCGTACTTTTAGTGATTCTAGTAACTTtactaaacataaaaaagtgCATAATCTAAGAGTGGTAGTATGTGATCTGTGCGGGAAGAAATTCCAGTCGAAATTGACGCTGGCGAGGCATATTCAgCAACATCAGAACTCGAAACCAATAACTTGCAATATTTGCAACAAAGTCTGCTACTTCGAATCTTCGTACCGCCGCCATCTTAAATATTTCCACGAAAAAACGAACACAGGGTTCCGTTGTGTAATCTGTGGCGACCGCTTTGATAGATTAAGAGATAAGTGGGACCATATGTGGAACGTACATAAAGAGAGGAAACAGAAAGCTGATTGTCCTATATGCCATATGTCTTTCAGAAAATATTCCGATGTTCGAGCCCATGCAAGGACAGTTCATATGAAggaaattacagttttgagcgtCAAAAAGGCCACCTTATCCAAGAAACGTGATTATAGCATCGTGAATAGATATGCAAGTAATCCCTCGGCGGGAATTACAGTGGGTCAAGGATCTGAAACATTAGTTATCTATGACTCTGAATGA
- Protein Sequence
- MADTSRKRSRKSKLVPREYPVDDENDLELQMRAAKVSKSTKQKPNKVNKPEPPASIPDPDASKSEEVCDTSVLRKINASAKESIETKETLPIKFTVNIEVESCDDHDYFGENRGQKSPSSRIENSLVKKDANPTPIPLTLEFILEAADNLNTSTNKADNILNTYVRNTIGYKHKQKLIQSSHEMKIQSTLEEWRNWQSRSFHREDPLFYKCYVCTRSYWYLSEFRDHLSTSHADDTLLNISLEKYLMHEANLIAYHKKLVVIRDIYTPGLCYRCGRDYRAHEISARYQEKFYMQAGCSRDFFCCTGLRDHFPSCTICNVQGKPFKCDICKSRFDTNDELVGHLVLSHSVRSDVPIMTRYVNCRVCLERYGCKYLHNCVEKSIGPNFECPHCLISFSNALTLELHMQTTRKPYKCEVCGDVMPFNCMKYDHLLVHTDNYMIVKKCMICDGLNVFVSNEDAKAHWTMKHKVMDLRRHIYFPKVFVPASCIYQRLAELDLKEQESFLEAQESVSEVQEELQTETEESQWGAEEQESGPEEQEWGAEEQESGSEDQQWEVEEENVLLEEQGSDADGAIMLLNNEEDSISACLQKTLQEKLDSATECTMGNIVVKEEPEDFESPRLVIKEEPLEEVENQFFEQENQTDNIEDQITVKQETVEEEELDEYEGDLIKLNFDIEDLLVKEETIQYEEEITNESQDSELDTEESLSQTEELQSQTEDSMLEPEIVITGEHRKNKKHYKCTTCGFQATHKLYKQHIEYDCSRNPVKHRRYNCTKCNTEFGSMKNYLAHFEHHGYQHMSCPECLKQLNNYTYFGQHIQAHVKQNFVRVKMITYAGDAMSRPDYQCKKCSENVDLTEFFDHWETHVKAKPSHLVKVISKPKKKDIHENLHGQLHETIIKECVAHLHKQPKECIHCHRMFKRTNECKRHIIEHLLVDAYNQKHIYKELRCQVCDSGFPASDKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLRVVVCDLCGKKFQSKLTLARHIQQHQNSKPITCNICNKVCYFESSYRRHLKYFHEKTNTGFRCVICGDRFDRLRDKWDHMWNVHKERKQKADCPICHMSFRKYSDVRAHARTVHMKEITVLSVKKATLSKKRDYSIVNRYASNPSAGITVGQGSETLVIYDSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -