Mbra007432.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- PRDM13
- Assembly
- GCA_905163435.1
- Location
- LR990992.1:20886829-20888395[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.57 48 5.4 0.0 1 20 100 119 100 121 0.95 2 11 5.6e-06 0.00047 21.2 1.8 1 23 177 199 177 199 0.98 3 11 6.2e-05 0.0052 17.9 1.3 2 23 206 227 205 227 0.96 4 11 3.1e-06 0.00026 22.0 0.1 1 23 254 276 254 276 0.98 5 11 0.72 60 5.1 0.1 14 23 284 293 279 293 0.92 6 11 0.72 60 5.1 0.1 14 23 301 310 296 310 0.92 7 11 0.72 60 5.1 0.1 14 23 318 327 313 327 0.92 8 11 0.75 62 5.1 0.1 14 23 333 342 330 342 0.92 9 11 0.26 22 6.5 1.0 11 23 347 359 343 359 0.89 10 11 0.26 22 6.5 1.0 11 23 364 376 360 376 0.89 11 11 0.26 22 6.5 1.0 11 23 381 393 377 393 0.89
Sequence Information
- Coding Sequence
- ATGAGGAACGATGATGTCCACAAGAGACCCAAGGTGTACGTAGAGCTGGACAGTAGCGGCTGGATGGTCTCGGCCGGAGGGTCCGGAGACGCCGCGCGGCTGTGCGTGTCTGCGCGTCTGGCGCCGCACGCActgtgcgccggcgccgcgctgTGTCTGCGCGCCGGACACCTGCGCCtgcgcgccgccgccgaccTGCCGCCGCACGCCGAGCTGCTGCTGTGGTTCGCGGACGACGCGCTGGCCGCGCTGGACATGCCCTTCCTCACGCCGCGCAACATCCGCGCGCGCCGCCACTACGTGTGCCACGCATGCGCCGCGCCCTTCGACGACCCCAACCCACTCAAGGTGCACCTGTTCCTGTCGTGCGCGCCCTTCCAGCCCGAGCGCTTCTGGCGCCAGGTGGCGGCGCGCCTGCGAGCAGCCCCGGGCCCCGAGCCCCTGAGCCCCGCGCCCCTGAGCCCCGGGCCCCTGGCGCCCGCGCAGCTGGAGGCGCTGGCCACGGAGTGGgggcgcgcgcgcggcggccaCGTGTGCGTGTACTGCGGCAAGCTGTACTCGCGGCGCTACGGCCTCAAGATACACCTGCGCACGCACACGGGCTACCGACCGCTGCGCTGCCGACACTGCCTGCGCGCATTCGGCGACCCCAGCAACCTCAACAAGCACGAGCGGCTGCACGCGGCCCGAGCCGGCGCGGGCCCCGGTGCCGGTCCAGGCGCGGGCCCCGGTGCTGGCCCAGGCGCGGGCCCCGCGCGGTTCGCGTGTCCACTGTGCGGCCGCGCACTGGCCCGCCGGCGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAGCAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAGCAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAGCAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCGGACAGCAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAACAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAACAGAGAGCGACCTGGAGCGTCACGTGCGCACGCACACGCACACACGGACAACAGAGAGCGACCTGGAGCGTCACGTGCGGACGCACACACAGACGGCAGAGCAATGA
- Protein Sequence
- MRNDDVHKRPKVYVELDSSGWMVSAGGSGDAARLCVSARLAPHALCAGAALCLRAGHLRLRAAADLPPHAELLLWFADDALAALDMPFLTPRNIRARRHYVCHACAAPFDDPNPLKVHLFLSCAPFQPERFWRQVAARLRAAPGPEPLSPAPLSPGPLAPAQLEALATEWGRARGGHVCVYCGKLYSRRYGLKIHLRTHTGYRPLRCRHCLRAFGDPSNLNKHERLHAARAGAGPGAGPGAGPGAGPGAGPARFACPLCGRALARRRDLERHVRTHTHTRTAESDLERHVRTHTHTRTAESDLERHVRTHTHTRTAESDLERHVRTHTRTAESDLERHVRTHTHTRTTESDLERHVRTHTHTRTTESDLERHVRTHTHTRTTESDLERHVRTHTQTAEQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -