Mbra026892.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:5823345-5844632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1.3 10.4 0.4 1 23 452 474 452 474 0.98 2 11 0.029 2.4 9.5 0.4 2 23 482 504 481 504 0.96 3 11 1.1 88 4.6 0.2 1 23 508 530 508 530 0.93 4 11 0.0015 0.12 13.6 0.8 1 23 535 558 535 558 0.97 5 11 0.00087 0.073 14.3 1.0 2 23 563 585 562 585 0.95 6 11 0.6 50 5.3 0.8 3 21 599 617 598 622 0.94 7 11 2.7 2.3e+02 3.3 0.1 2 23 673 695 672 695 0.92 8 11 0.47 39 5.7 2.2 1 10 710 719 710 732 0.80 9 11 8.9e-06 0.00074 20.6 4.0 1 23 738 760 738 760 0.98 10 11 1.1e-05 0.00093 20.2 4.1 1 23 767 789 767 789 0.96 11 11 0.00016 0.013 16.6 1.1 1 23 795 818 795 818 0.92
Sequence Information
- Coding Sequence
- atgAAGTGTTGTATACAAAATTGTCGGAATAACGGGAAAGTGAAGAAATTATCTACTAGTTCTGATTGGATCACTTTtcatttGATTCCAAAGGATGCAAAACTGCGGGCATCATGGCTTCAGGCCTTGTCCATACCAAACTGGATGCCACTGAACAGAACCGTGATATGTTCAGATCATTTCAAAGAAGATGACTTTTACGTTACTAAGCAAGGAACTAGGAGGATAAAATATGGAGTTGTTCCATTTCTTGAGGTTTGCAAACTTTGCCTCTCATTGGACGGCAAGATGTACCAATTGAAAGACAACAGTTTGGCCAAAATGTATCAAGATATTATGGGAATAGCGCCAAGAACGGACCTTAACAACAGACTTCCTATGGGCATCTGCTGGGAATGTACTGCAAGGCTTCAGTCAGCCGCTTCATTCAGATCGAAAGCGCTTTTCAGTGATGCATTGCTGCAAGATCATTTGAAGAACAATGCCGATctaAACATCATCGACATACAAAACCTACATCGCCAACACACTAACCTAAAACCAACAATAGCAGTGCAAgaagtatttaaatttaacagCCACAACTCTGAAGAACACGCCCCAAACACCTTAATAAAATCAGAAGTTATAGGGATACCGCATAACGAAGAAATCGAGATCGAAGTGCAAAATCTAGTTAGCGAGACAATAACTATAAAAGACGAAAGGAAGAGCGAATTTATTGAAGAAGCCTGTCCTAACAGTGATGTGAAAACCGAAGTCGATTTAATACCTACTGAAATTGATATCGCTGATAAAgaaaccgattttgaagattttagTGAAGACGATTGTTGTATcgttaaagaaaatgtttatgtCAACGAAACGAAAGTTAGCTtggataatattgttttatttaaaagtgaGGGAAAACATGAGGAGAAAATTAATCTTTCTGGTAACATTACTCTGGGACAGTCAGATACAAATATCtatagtgatgatgatgatgatttaatggATTTAAATGATGATGTTCTCAGTAATgttgatgacgacgatgatagTATAAAGGCCGAAAATAAAAAGGTTGTGTCGCCAAAGAAAACAAATgaagttaaaaagaaaaaaacagctgttaaaACGAAGGCAAAGACGGATGATGAAGTTGTTATATGGGTAAAAGGAAGGAGatcaaaaaaatcgaataaaaaaatcaaatcaacacAAAAGTCGAAGACGAAACAGCCTTATGTCAAGCCCAGTATACCGATTGACGAGAATATCTTCACGGTTAAGAATTTAAATCACGACGATTTGAGGAAGGAGATATTGGCCCGAAGGGATGGAGACCAATATAGGTTGGCGCCGTACAAATGTGACGTTTGCTTTCGAGGATTCCCTACTATGGATAAGCAAGCCAGACATGTGATTAAACATAGCGAGCAAAGCGGTTCGATAAAGTGCAATATATGCAATGTGCGTATGGCAAAGAGTAGAGACCTGCGCGCGCATGTGAAAAGACAACACACTTCCGAGTTTATTTGTAAACTCTGTCCTTTGGTTACAAGGAATCGgaacGTTGCGCTTGGGCATATGAAGTACCACGAAGGTAGCAAATACGAATGTCCACAATGTTTTGTTGAGTTCGAgaagaaaacaacattattaAATCATCTCCGTTTGAAACATATGTCTGCCTGTGTTTGCGAGTTGTGTGGATACACGTTTGTCAGTAAGACTGGCGTTGAAGTACACAAGAGGATGAGACATaaactttttgataaaaatACGGAGTTCAAGGGGCAATTCTGCGATGTTTGCGAAGTGAAGTTCTTGAATCAAAAGGCGTACAACAGACATCTCCGGCTGTCTTCCAAACATATTAAAGAGGATGATCCtaatCGTATGAGCAACGACCCATCTATCAAACAGCGCCGCCTGGGCTCCTCTTGGGTGAACGATCGTCGCGCGCGCCGCCCCGTCATACATCGCAAGGACGCCAACACTGTGCCAGCTGCCAACGGACCCGTTACCTGTGAACAGTGTGGCGTGATACTAGAAAGTCTCCGCGCTTACTCTGCCCACTTCAAATACTCGCACCCCGGAACCAACCGCACGCAGTTCGCGCACACCACCACCCCTTACATGTGCGAGCATTGCGGCAAGTTCTTCTTGAACACAACCACCCTATCCTGCCACATGTGGGTCCACACAGGTCAGAAGCGATTCCAATGCGACCACTGCCACAAATCGTTCACTATGAAGGCGAACCTCGCAGGTCACATGCAGCAACACCAGCCCGTACGACGGACGTACGACTGTCGTGTGTGCGGGAAACACTTTACGTTCAGCTACAACCTCACCAGGCATATGTTTCTACACACAGGCCTTCGCCCCTTCAAATGTGACGCCTGTGAGAAAACGTTCCGTACATCAGGGGAACTGCGTTCTCATGTCGACCATGTTCACTTGAAGAAGCCTCGACCCAAACGCGTCAGACGGAAGGCGAAGAAATGTGAAATGACTAGCTTAGAGTACTGA
- Protein Sequence
- MKCCIQNCRNNGKVKKLSTSSDWITFHLIPKDAKLRASWLQALSIPNWMPLNRTVICSDHFKEDDFYVTKQGTRRIKYGVVPFLEVCKLCLSLDGKMYQLKDNSLAKMYQDIMGIAPRTDLNNRLPMGICWECTARLQSAASFRSKALFSDALLQDHLKNNADLNIIDIQNLHRQHTNLKPTIAVQEVFKFNSHNSEEHAPNTLIKSEVIGIPHNEEIEIEVQNLVSETITIKDERKSEFIEEACPNSDVKTEVDLIPTEIDIADKETDFEDFSEDDCCIVKENVYVNETKVSLDNIVLFKSEGKHEEKINLSGNITLGQSDTNIYSDDDDDLMDLNDDVLSNVDDDDDSIKAENKKVVSPKKTNEVKKKKTAVKTKAKTDDEVVIWVKGRRSKKSNKKIKSTQKSKTKQPYVKPSIPIDENIFTVKNLNHDDLRKEILARRDGDQYRLAPYKCDVCFRGFPTMDKQARHVIKHSEQSGSIKCNICNVRMAKSRDLRAHVKRQHTSEFICKLCPLVTRNRNVALGHMKYHEGSKYECPQCFVEFEKKTTLLNHLRLKHMSACVCELCGYTFVSKTGVEVHKRMRHKLFDKNTEFKGQFCDVCEVKFLNQKAYNRHLRLSSKHIKEDDPNRMSNDPSIKQRRLGSSWVNDRRARRPVIHRKDANTVPAANGPVTCEQCGVILESLRAYSAHFKYSHPGTNRTQFAHTTTPYMCEHCGKFFLNTTTLSCHMWVHTGQKRFQCDHCHKSFTMKANLAGHMQQHQPVRRTYDCRVCGKHFTFSYNLTRHMFLHTGLRPFKCDACEKTFRTSGELRSHVDHVHLKKPRPKRVRRKAKKCEMTSLEY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00300599;
- 90% Identity
- iTF_00951910;
- 80% Identity
- iTF_00951910;