Mbra024958.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR991014.1:4327576-4338130[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.004 0.33 12.2 1.2 1 23 78 101 78 101 0.97 2 16 6.4 5.4e+02 2.1 3.0 8 23 182 197 173 197 0.82 3 16 0.00024 0.02 16.0 0.3 1 23 201 223 201 223 0.98 4 16 0.015 1.3 10.4 2.6 1 23 329 352 329 352 0.97 5 16 6.4 5.4e+02 2.1 3.0 8 23 433 448 424 448 0.82 6 16 0.012 0.99 10.7 0.3 1 23 452 474 452 474 0.96 7 16 3 2.5e+02 3.1 3.4 1 23 479 502 479 502 0.92 8 16 0.0025 0.21 12.8 3.6 1 23 579 602 579 602 0.94 9 16 1.2 99 4.4 0.2 2 23 629 651 628 651 0.93 10 16 0.0083 0.69 11.2 0.3 1 23 699 721 699 721 0.91 11 16 0.0053 0.45 11.8 0.6 1 23 726 749 726 749 0.97 12 16 0.0021 0.17 13.1 1.1 1 23 756 779 756 779 0.94 13 16 4.5e-05 0.0038 18.3 0.4 3 23 788 809 787 809 0.95 14 16 0.00046 0.038 15.2 1.2 1 23 815 837 815 837 0.95 15 16 3.7e-05 0.0031 18.6 3.5 1 23 843 865 843 865 0.99 16 16 1.7e-05 0.0014 19.6 5.7 1 23 871 894 871 894 0.98
Sequence Information
- Coding Sequence
- ATGGATAAAATGGCAGGAGataaacaacaaaaactggCTTCAGAAACGAAACTCAAAATAGAGCAGAAAGCTGAAGAAACTGTTTCTCCTGAGAAAGAGCAAATAACAGTAAATCCAGAGCCTGCACAACGAATACGCATAAAGCGACTACTACACGAACATCTACACAACTTGAAAATTATCCTAGAATCTACTAATGCCACTATGATACTCAAACATGGAGACAAGGGATACTATTGCTGCTATTGCACTGAAGTCTTCCAAGAACCCATGGATTTGAAAGTACACACTTTGACAGAACATCCAAATGAAGACAAATTCTATGGCAGCATTACAGCTAATGGACCATCTAGGTTCTTAGTCAAACTTGACATCACGAACCTGAAATGCATGCTTTGCAGTACTAATATAGAATCTCTCGAAGATATGTTCGCACATCTGACAAAGAAACACAATGAAGAGTTTCATACTGACATACAAAACCAAATATTTCCTTTCAAGTTTATTGGGAAGGAATTGAAATGCTGTCAATGTGCAAATGACGTCGTTTTCGCTACGTTCAGTGCATTGCACGAGCATATGCACAAGCATTACCGATACTTCGTTTGTACGGAGTGTGATGCTGGATTCATTAATCAATTTTCACTATCTAAACACAGTCTCACTCACACGAAAGGGGCTTTCGCGAGCCGACATTGTCCAGAGGTATTTGACAACGTGGTCAAGAGAAGCAATCACAAGCTGCGTAGCCACAATAAAACTGAATATTCAAataaacaacaaaaactggCTTCAGAAACGAAAATCAAAATAGAGCCGAAAGCTGAAGAAACTGATTCAACTGAAAAAGAGCAAATAACAGTAAATCAAGAGCCTGCGCAACGAATACGCATTAAGCGACTACTACACAAACATCTACACAACTTGAAAATTATCCTAGAATCTACTAATGCCACTATGATACTCAAACATGGAGACAAGGGATACCATTGCTGCTATTGCACTGAAGTCTTCCAAGAACCCATGGATTTGAAAGTACACACTTTGACAGAACATCCAAATGAAGACAAATTCTATGGCAGCATTACAGCTAATGGACCATCTAGGTTCTTAGTCAAACTTGACATCACGAACCTGAAATGCATGCTTTGCAGTACTAATATAGAATCTCTCGAAGATATATTCGCACATCTGACAAAGAAACACAATAAAGAGTTTCATACTGATATACAAAACCAAATATTTCCTTTCAAGTTTAATGGGAAGGAATTAAAATGCTGTCAATGTGCTAATGACGTTGTTTTCGCCACATTCAGTGCATTACATGAGCATATGCACAAACACTACCGATACTTCGTTTGCAACGTGTGCGATGCCGGATTCATCAATCATATATCACTATCCAGTCATAGCGTCACTCACACAAAAGGGACCTTCTCCTGTCGACATTGTACTCTTGTATTCGACAACGTGTTCAAGAGAAGGAACCACGAGTTGCGCAGCCACAATAAAATTGGCAAAACGAATAAATGCCATTTCTGTAATGAAGgtgGTCGAATAAATACTGTTGTGAAAGAAGCGCCTAAAGAAAATATAGACGAAAAGAACTTAGAAAACATCCaaaaagaacttaaaataacaCCAAGAACTGACCTGTTAAAACATCGAAGTAACATTAAGGAAGTTCTTCTAAATTCTAACGCAACACCTATAAGAAGATATGGAGGGATCGGATACACGTGTTGCTTCTGCCCACGCCAGTTCGAACACCCTGCTGAACTTAAGAAACACACTCTAgaaaatcacaaaaacatttCAGAGGCAAACTTCATGAAGAACATGAACATGTCCGAGTATGTCGTCAAGTTAGACATAACCTCACTAAAGTGCAAGATTTGCGATAGTGATATGAACACCCTAGATAGCTTTATAGACCATCTTCAAAATATACACGACAAGAAAATTAACAAGGACTATATGAATCATATCTTCCCTATTAAATTCGATAACGATTTACTAAGATGCATTCTTTGCTGTAATATTAGCAGCACGTTTAGGACCCTGGTTAGTCATATGCATGTCCACTACAGGAATTATATTTGCACTGTTTGTGACTCCGGGTTCGTGAACAGAAACTCTTTGACGCAACATTCAGTGAATCATGGAAAAGGAGCGTTTGTTTGTGAACATTGCCCTAAAATCTATCCCACTCTTGCAAAGAAACGGTTGCATGAAAGGACAGCCCACACACATGTTGATGCCACTTACAAATGTGGctattgtaaaaaaacttttaaagaaTACGGACAAAAGGAAGCTCATGTAACTTCTGTACATGGTGTTGTGTCATCGAAAGCTGTGTGTCAAGCGTGCAATAAAGTATTTGCCAACAGGAAAAGCCTGAACATTCACATCAGAAAAGACCATTTAATGGAGAGGCCTCACAAATGTAAGGAATGCGACATGGCGTTTTATTCCACGACTGGGCTTAAAAGTCACATGGTTGGGCATACAGGGTCGAAGGAATTTCAGTGTTCTGTATGTCTCAAGTGCTATGGAAGGAAAAAGACACTGAATGCTCATATGAATACACATGCTGAAGAAAAGAAGTTCAAATGTGAACACTGTAGACAGAGATTTACGCAAAAAAGCACTTTGAGAGGCCATATGAGATCTAAACatgaaacaattatttaa
- Protein Sequence
- MDKMAGDKQQKLASETKLKIEQKAEETVSPEKEQITVNPEPAQRIRIKRLLHEHLHNLKIILESTNATMILKHGDKGYYCCYCTEVFQEPMDLKVHTLTEHPNEDKFYGSITANGPSRFLVKLDITNLKCMLCSTNIESLEDMFAHLTKKHNEEFHTDIQNQIFPFKFIGKELKCCQCANDVVFATFSALHEHMHKHYRYFVCTECDAGFINQFSLSKHSLTHTKGAFASRHCPEVFDNVVKRSNHKLRSHNKTEYSNKQQKLASETKIKIEPKAEETDSTEKEQITVNQEPAQRIRIKRLLHKHLHNLKIILESTNATMILKHGDKGYHCCYCTEVFQEPMDLKVHTLTEHPNEDKFYGSITANGPSRFLVKLDITNLKCMLCSTNIESLEDIFAHLTKKHNKEFHTDIQNQIFPFKFNGKELKCCQCANDVVFATFSALHEHMHKHYRYFVCNVCDAGFINHISLSSHSVTHTKGTFSCRHCTLVFDNVFKRRNHELRSHNKIGKTNKCHFCNEGGRINTVVKEAPKENIDEKNLENIQKELKITPRTDLLKHRSNIKEVLLNSNATPIRRYGGIGYTCCFCPRQFEHPAELKKHTLENHKNISEANFMKNMNMSEYVVKLDITSLKCKICDSDMNTLDSFIDHLQNIHDKKINKDYMNHIFPIKFDNDLLRCILCCNISSTFRTLVSHMHVHYRNYICTVCDSGFVNRNSLTQHSVNHGKGAFVCEHCPKIYPTLAKKRLHERTAHTHVDATYKCGYCKKTFKEYGQKEAHVTSVHGVVSSKAVCQACNKVFANRKSLNIHIRKDHLMERPHKCKECDMAFYSTTGLKSHMVGHTGSKEFQCSVCLKCYGRKKTLNAHMNTHAEEKKFKCEHCRQRFTQKSTLRGHMRSKHETII*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -