Mbra026745.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- Bcl11a
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:4314675-4328727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.055 4.6 8.6 1.8 1 23 498 521 498 521 0.91 2 11 0.036 3 9.2 0.5 3 23 530 550 528 550 0.97 3 11 0.011 0.91 10.8 0.4 2 23 555 577 554 577 0.96 4 11 0.0047 0.4 12.0 0.9 1 23 581 604 581 604 0.96 5 11 0.018 1.5 10.2 2.1 2 23 608 630 607 630 0.96 6 11 0.00031 0.026 15.7 2.2 3 23 635 656 634 656 0.95 7 11 0.015 1.3 10.4 0.3 3 21 675 693 674 694 0.93 8 11 0.0028 0.24 12.7 0.1 2 23 707 729 706 729 0.95 9 11 0.1 8.5 7.8 1.2 1 23 735 758 735 758 0.93 10 11 0.00096 0.081 14.1 0.4 3 23 769 789 768 789 0.98 11 11 2.1e-05 0.0017 19.4 0.3 1 23 795 818 795 818 0.98
Sequence Information
- Coding Sequence
- ATGACGACAACCAAAATGATaacatttaattgtaaaaacgTTGTCAGGTCAGTGGACAGTATACGACAACTTTGTCAAGAAGTCGATTTGATAGCGCTGCAGGAAACATGGCTGCTGCCACACGATCTGTCTTTTCTGGGTACTATAGATGACAACTTTGCCTTCACGGGCACTTCGGCAGTGGATACCTCGGTCGGTGTGCTGCGGGGGCGACCATACGGAGGAGTTGCCCTTCTCTGGCGAAAAAGTGCGTTCCCTGAGGTGACAGTAATCAACTGCACTAGTGTGCGTCTTGCAGCTGTTAGGGTAACGCTGAGTGATCGGTCATTCGTGGTGTTCTCAGTGTACATGCCTACTGATTGTAGTGACAATTTCTTAGAATTCACAGAGTGCTTAAGTGAGATAAACGCGGTGATTGAGAATAATAGTGTCGAGTCGGTTTTTATTCTGGGTGACTTTAACGCACACCCGGGTGAACTGTTTGCTAACGAGTTACTTTCGTTCTGTGCGGAGCAGTTATGGTCGTGCGTTGATATGAATACACTTCCATCGGACACCTATACATATGTAAGTGATGCACACGGGTGCGTGCGCTGGCTCGATCACTGCGTAGTGACAGGTGCCGCGCTGCCCGCTATTCTCAATGTATCGGTATTGTATGACTCATACTGGTCCGACCACTTACCTGTCATGTTAGAATCTGAGTACAAGCTTGAGTGTGGGGTGAGGCAGGGCGGGCTGTCCTCGCCCACGTTGTTTAATCTGTACATGAATAATCTGATCGACGAGCTTAGCAGAACCGGAATCGGCTGTCACATTGATGGTgtatgcattaataatattagctatGCCGACGATATGGTTCTGCTGAGCCCATCGATCAGGGCATTAAGGAAACTGATCAACGTGTGTGAATCTTACGCCGGGACTCATGGGCTCAAATATAATGCAACAAAGAGCGAACTCATGAACAGCATACCTCATACACTATCTGTACTCATAAAAACCAAACACAAAGAATATGACCACAACTACATCTTCGAAGAAGAGAAAAAGGAACCCATATTTGATCAAAATGACCTTCACGAACAGAAAAACCTAATTCTCAACGAAATAGATCTcatatttgaacaaaaagaagaaacagAAGCGGGAAGCCTTCTGACAGAcataaaaattgaaaacaacGGAATAATCAAAGAAGAGTATGAACACGATAGCAGTTTCAACAATGATCCGGATTACTACGAACCAGATTTGAAACAGGAGACCGATGATATCGATTCATATTACCGACAAAAACCAAAAAAGAGGGTCCGCAAGCTACAACCAAGAATCAAAAAGTATGAACAATTTACTACCGTAACTAAAATTAACGGTAAATTCTCTGAAAACGTTTATCAGTATTATGATACGGTCTACGTTAGTCCGAAGATAGTGGAAGATGATTATAAAGAGAAAGGTACGCACCGGACGGGTAAAAGTCTGGCGTATCGATGCAAAACGTGTAATTCTGCGTATGTCAGGCGTGTGGACTATCTCAGGCATACCACTTTTAGTCATAGCCAGCTACAATATCCAACAAATTGCACATTCTGCAAAAAAGAGATATCCGCAGAATCTCAACTTGAGGAACATTGGAAGACTCACAGTCCAATGCTACGATGTTCTATCTGTGGCGATCTGTTACGAACTAAAGGAGAGTTGACGAAACATCTGAATAGAACGCATACTAAGAAGTTTGCCTGTAACAGTTGTTCGGAGGAGTTCAGaaCTCTTCGAGAATTCAGcaaacattacattacagttCACGAGAGGGTCACCTGTGATTACTGCAATAAGAATGTATGTTCCAAGCTGAAACTAGAGGGACACATCAAAAGAAACCACATCCCAGGCCACTGTTCGATCTGCAACAAAGATTACCCAACGTACCATTTACTAGAGAAACACATGCGCGGTGTCCATCCCACACTAGTCCCGCACTTAATTACGAACGAAGCGAACGAGGAAACGCGCTACTGTGTTGAGTGCGACAAGCAGTATCCTACTATGAGCAAATATAAGAGACATTTGCTGCAGTCGGTGGTGCATACGCCGAGGAAGAAAGTTAGAATACCGTGCCCGGCCTGCGACAAGATATTCTCCCGCGTGTCATATAAAAACAATCACTATCGATTGGTGCATATAAAGGAAAGTAAACACTACTGCGAATTGTGTAATAAGTACTTCGCGAACGGGTTTGGCGTTCGCCAGCACATACAGTTCGTTCATCAAAAGATACAGAAGCCCAAAGACAAGATCTGCGATCTATGCGGAAGAGGATTTAGTTCGAACAGGATCCTAGCTAACCACCGCCGCACTCACACGGGGGAACGCCCCTACAAGTGTGAGTATTGTCCCGCGGCGTTTGCGCAGGCATACGCCATGAAGACGCACCAGAAGACTCAGCACAAGAGTATTTTGATGTCGCGTTAG
- Protein Sequence
- MTTTKMITFNCKNVVRSVDSIRQLCQEVDLIALQETWLLPHDLSFLGTIDDNFAFTGTSAVDTSVGVLRGRPYGGVALLWRKSAFPEVTVINCTSVRLAAVRVTLSDRSFVVFSVYMPTDCSDNFLEFTECLSEINAVIENNSVESVFILGDFNAHPGELFANELLSFCAEQLWSCVDMNTLPSDTYTYVSDAHGCVRWLDHCVVTGAALPAILNVSVLYDSYWSDHLPVMLESEYKLECGVRQGGLSSPTLFNLYMNNLIDELSRTGIGCHIDGVCINNISYADDMVLLSPSIRALRKLINVCESYAGTHGLKYNATKSELMNSIPHTLSVLIKTKHKEYDHNYIFEEEKKEPIFDQNDLHEQKNLILNEIDLIFEQKEETEAGSLLTDIKIENNGIIKEEYEHDSSFNNDPDYYEPDLKQETDDIDSYYRQKPKKRVRKLQPRIKKYEQFTTVTKINGKFSENVYQYYDTVYVSPKIVEDDYKEKGTHRTGKSLAYRCKTCNSAYVRRVDYLRHTTFSHSQLQYPTNCTFCKKEISAESQLEEHWKTHSPMLRCSICGDLLRTKGELTKHLNRTHTKKFACNSCSEEFRTLREFSKHYITVHERVTCDYCNKNVCSKLKLEGHIKRNHIPGHCSICNKDYPTYHLLEKHMRGVHPTLVPHLITNEANEETRYCVECDKQYPTMSKYKRHLLQSVVHTPRKKVRIPCPACDKIFSRVSYKNNHYRLVHIKESKHYCELCNKYFANGFGVRQHIQFVHQKIQKPKDKICDLCGRGFSSNRILANHRRTHTGERPYKCEYCPAAFAQAYAMKTHQKTQHKSILMSR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -