Mbra027045.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- RTase
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:8890585-8916046[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.9e-05 0.0066 17.6 4.4 1 23 141 163 141 163 0.98 2 10 0.32 27 6.2 0.3 1 23 170 192 170 192 0.96 3 10 1.6 1.4e+02 4.0 0.1 1 23 196 218 196 218 0.97 4 10 3.3e-06 0.00027 21.9 0.4 2 23 904 925 904 925 0.98 5 10 8.4e-05 0.007 17.5 4.7 1 23 931 953 931 953 0.99 6 10 0.00071 0.059 14.6 1.8 1 22 959 980 959 984 0.93 7 10 0.51 42 5.6 0.2 1 23 992 1015 992 1015 0.96 8 10 0.0062 0.52 11.6 0.2 1 23 1021 1044 1021 1044 0.90 9 10 7.2e-06 0.0006 20.9 1.0 1 23 1053 1075 1053 1075 0.98 10 10 3.4e-05 0.0028 18.7 0.7 1 23 1081 1104 1081 1104 0.96
Sequence Information
- Coding Sequence
- ATGCGCGCGTACATCTGCAGCGAGGCGGACACAACCATCCAAACGCAACGCACTGCAATGAGCCGGCCGCCACACGGCGCACACGCGCAGTGCGTTGTGCGCCGTGCGGAGCGCATGCCTTGCCAAGTCTGCGCGCCTACTTGCCTCGAGCATTTGCTTCGCACGCGATGGCTCGACCCGAGCGTATGTTGGTATAATTTGTCAACACGCACGCCTCAAGCCGAGGCATGCGTTGTGCGCCGTGCGGAGCGCATGCTCGCGATCGAGTCAACTCCGGAAGACGAGAGTCAAGCGGAAACCAAGTCCTCGATAAGGAAGCCTGTAGAACTGGATCCAGCGAAGATCAGGATAGTCACCCTGAACCCTGAGGAGCAGATCAAGCATAGAGAGGAGGAAAGCAAGGCAGGCTTAAAGTTTCCGTTCCAGTGTAATTTGTGCCATAAAGGGTTCAACTTTGAGTCGAAATTGCAGAATCATATGAGCAAGCACAGTCCGTCCCGAGGCCCGTACGAGTGCAAGCTGTGTCGTATGTACCTCCCCACCGCGTACAGCTTCAACGTGCACTCTCTCATACACAACAGACGGTACGAGTGTGTCGCGTGTGGACGACGCATGATCGACAGAGCCTCCATCATAGACCATTACAGGTATCATCTTGCTTGTTTGCCCGATGCAACGCAGATAAGCAGCGACTGGTTGTGCCCGGAGTGCAAAAGCAAAATGCCTAAGGGTGATAATAGCGACACACCCGTCAGGGGCCTGGGAAGTGGTACACCTGCCATTCGAGCGGTTGCGGCAGGCTCTGCGGCGGCAGCGACGGGATCTGCAGCGGCAGCAGCAGTCTCTGCAGCGGCAGCGGCCATGATCCCGGCATCAGACCAGGGCGCTACTAGCAGGTCGCCGGCAAAAGTAGCCCAGGTTCAGGGCTCCTTGACCAAGCCTCACGTCGCAGTACCGAAAGGTATATCTCGGGCTGGAAGCGAGCAGGGTACTGATGGCGAACCTTCGCCTGACACGCAGCTCACCCTACGTGAGGAAATCAGGCTGTTCAGGTCTGAATTACGGGAGGTCTTGGAGAAGGTTGTCTGCAACCAGCTTCGGACATACCTTgagaaacacaatattttgccaCTTTTACAATCAGGTTTTCGCAAAGGACACAGCACAGCCACTGCCCTTCTGGACGTGGTTGGAAACATCCTTGAAGCCAGAGACAAGGGCATGGGCACCATGCTTGTCCTGCTAGATTTTTCACGTGCTTTTGACTCTATCAATACATCGCTTCTCCTCTCCAAGCTGTCTTACTATGGATGTCAGCCTGAGACGGTGCAATGGTTTCAGAGTTACTTGACTCACCGATCTCAGTTAGTCCAGGTTTCAAGCGATAGTGATGGAGCCGTTAAGTCCTCTGATCCTAAGTGCGTGAACAGGGGCGTGCCGCAGGGATCGATCCTTGGTCCGCTTCTTTTCATTTTGTACAGTGCTGATATTACTAACTGCCTGCTCAACGCCAAGTTCCACCTTTATGCTGATGATCTGCAGATGTATTTGCCATTTCATCCTCAGCAGACTGTTGACACTGTAAAAAGAATGAACGAGGATTTGGATAGGATCTCTGCCTGGTCGACAAGAAACTCCCTGGTTCTGAACccagtaaaatcaaaatttatggtCATGGGGACTagacattttttaagtaaaatgagtAATGTGGGCTTGGACTTGAAGATTGATGGGTGTTCCATAGAAAGGGTGCAGGAAGCCCGTAATCTTGGGGTGATATTTGATGAGCAACTGCATTTTGAGACTCATGTCATGGAGGCTGTGCGCAACTGCTTCTACCGTCTCAAACTCTTGTACCGTGTCCGTCCCTACATAAGTGTGGATATGCGTGTCATGCTCTtttcgcatttatataagACATTTATAAAAGTGATCGAGAACCGAATATCAAATCAACTTGACGCTCAACAACCACCTGAGCAAGCAGGGTTTCGCCGAGGCCTCTCCACTACCGATCACCTACAATCCCTCAATCAAATAATAGAGAAGTACACCGAGTTCAAAATCCCCCTCTATCTAGCGTTCGTCGACTACGCCAAAGCGTTCGACAGCATCCACCACGATTCACTATTCAATGCCCTCCGCAACCAAAATATAGATACCACCTACGTcaacttattaaaaactatataCCGTAATAGTACAGCAGCTATAAAAATTACTACCACCGGACCTTCCTTTCCTATTGAAAGAGGTGTCAAACAAGGCGACCCGCTGTCCCCCAAGCTGTTCACTGCCACCCTTGAAGAGGTTTTTGAAAAGTTAACCTGGTCTGATAAAGGCATTGTCGTCGGCGAAAAAAGGTTGACCAACCTGCGTTTCGCCGACGATATTGTCCTGTTTTCATCTTCGGCAGCTGAACTAGGTGAAATGCTGAGTGACTTAAATAAGGCAAGCCTCGAGATTGGACTTCGGATGAACATGTCAAAGACCAAACTCATGACAAACAGCGCCcaacaaaaactgtatttagAAGGCGTGGAGATTGCTTATGTACCAGAATACATATACCTCGGCCAAATAGTCTCATTCCAGGcgagacaagaaaaagaagttgctcgccgcaccgacaacgcctggaagagctattgTAACAACAAAACTCACCGAGGTCATATGAGGAATCACCACAGTGGAGACAGACCGAAATGTGAGCAGTGCGGGAAAACATTCATCAATAAGGACTCTTTAGTGGAACATCAACAAATACACCAGGGCATCAAGAACTACGAGTGCTCGATATGTAGCAAACGCTTCAGGACGAGAACACAAATAAAACACCATCAGCTTACCCATACCGATGTCAAGGATTACTACTGCGTGGAGTGCGACGTCAGGTTCAAATCAGCGCACAGTCTCCGACAGCATCTTCAGAAGAGTTTGAAACATCGGGATAAGCAGAGTTTGAAGTTCTCGTGCACGCGCTGTCCGGCGCGCTTCGCGTGCGCGCGCGGGCTGGCGGCGCACGCGCGCGTGCAGCACGAGGGCGTGCGCGCGCACGTGTGCGGCGAGTGCGGCGCCGCGCTGGCGTCGCGCTCGTCGCTGCGCAAGCACGCGCACGCCGTGCACCGCGGCGTGCGGCCCGCGCGCCGGCACGTCTGCGACACCTGCGGGAAGGCGTTCCGGGGTAAGAGCGTACTAACGAACCACGTGCGGACCCACACGGGGGAGAAGCCCTTCGAATGCAGCGAGTGCGGCCGAAGGTTCACACAACGCACGGCCATGAGAACGCACGTCAAACTGGTACATCTGAAACTACGTCGTACGGCTaagATCAAGCCGGAGCTGCCCCCGGGGGCGCAGTCGCCGAAGCTGGACGTGTTCAAGCCCGAGCCGCTGGCGGAGCCCTGGCGAGCCCCCTGCGACGTGTACTTCCACGTCAGCGCCGTCTGA
- Protein Sequence
- MRAYICSEADTTIQTQRTAMSRPPHGAHAQCVVRRAERMPCQVCAPTCLEHLLRTRWLDPSVCWYNLSTRTPQAEACVVRRAERMLAIESTPEDESQAETKSSIRKPVELDPAKIRIVTLNPEEQIKHREEESKAGLKFPFQCNLCHKGFNFESKLQNHMSKHSPSRGPYECKLCRMYLPTAYSFNVHSLIHNRRYECVACGRRMIDRASIIDHYRYHLACLPDATQISSDWLCPECKSKMPKGDNSDTPVRGLGSGTPAIRAVAAGSAAAATGSAAAAAVSAAAAAMIPASDQGATSRSPAKVAQVQGSLTKPHVAVPKGISRAGSEQGTDGEPSPDTQLTLREEIRLFRSELREVLEKVVCNQLRTYLEKHNILPLLQSGFRKGHSTATALLDVVGNILEARDKGMGTMLVLLDFSRAFDSINTSLLLSKLSYYGCQPETVQWFQSYLTHRSQLVQVSSDSDGAVKSSDPKCVNRGVPQGSILGPLLFILYSADITNCLLNAKFHLYADDLQMYLPFHPQQTVDTVKRMNEDLDRISAWSTRNSLVLNPVKSKFMVMGTRHFLSKMSNVGLDLKIDGCSIERVQEARNLGVIFDEQLHFETHVMEAVRNCFYRLKLLYRVRPYISVDMRVMLFSHLYKTFIKVIENRISNQLDAQQPPEQAGFRRGLSTTDHLQSLNQIIEKYTEFKIPLYLAFVDYAKAFDSIHHDSLFNALRNQNIDTTYVNLLKTIYRNSTAAIKITTTGPSFPIERGVKQGDPLSPKLFTATLEEVFEKLTWSDKGIVVGEKRLTNLRFADDIVLFSSSAAELGEMLSDLNKASLEIGLRMNMSKTKLMTNSAQQKLYLEGVEIAYVPEYIYLGQIVSFQARQEKEVARRTDNAWKSYCNNKTHRGHMRNHHSGDRPKCEQCGKTFINKDSLVEHQQIHQGIKNYECSICSKRFRTRTQIKHHQLTHTDVKDYYCVECDVRFKSAHSLRQHLQKSLKHRDKQSLKFSCTRCPARFACARGLAAHARVQHEGVRAHVCGECGAALASRSSLRKHAHAVHRGVRPARRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFECSECGRRFTQRTAMRTHVKLVHLKLRRTAKIKPELPPGAQSPKLDVFKPEPLAEPWRAPCDVYFHVSAV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -