Mbra010374.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mamestra brassicae
Gene Symbol
-
Assembly
GCA_905163435.1
Location
LR990996.1:933846-952993[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.002 0.17 13.1 3.2 1 23 394 417 394 417 0.96
2 7 0.00095 0.079 14.2 3.3 1 23 582 604 582 604 0.98
3 7 7.2e-05 0.006 17.7 2.2 1 23 609 631 609 631 0.97
4 7 1.5e-06 0.00012 23.0 0.7 1 23 637 660 637 660 0.97
5 7 4.4e-07 3.7e-05 24.7 1.4 1 23 666 688 666 688 0.99
6 7 7.1e-05 0.0059 17.7 5.7 1 23 694 716 694 716 0.99
7 7 6.3e-06 0.00053 21.0 2.3 1 23 722 744 722 744 0.98

Sequence Information

Coding Sequence
ATGGACGAAGCCGTCACGCACTATATAACTTCCCACCCAGCTGATCAGGCAGTTCATGTGGATGGCAATGCCTTGGCTCTCAATGTGCAGGATGATGGAGGCAGTAGAGTGGCCATCATGCACTCACAGACCTACTCTGCATCGATGTGCAGGCAAGTGTCAGTGGGTGACCATGTGGTTGAGGGACAGTGGAATGATGAGATCATGGATGAAGGCCGGCTGGCAGCCTTCGTGGCACACATCACGGCACAGCAGTCCAGAGGACAGCAACAACTGCACCATAAGGTGCATACAGTGAGGGGTGACGTGGACTCATCCATTATTCTTGATAGTTCCATGAGACTATTCCATGGCCAGCCTATGGACCAGTCACAAGAACCGATCGTGGTGGAGGTACCCCCCTTGCCTCCACTGCCTCCCCTGCAAGAGATGAAGAGGTGTCAGGAGAATGACTGGTTCAATAACAAGGCTAAATCATCACTCAAAGATGATTCGTCCATGATTGATTCGGACGGGCCGGTGTTAGAGCTGGGCGCCGGAGCGTCGCCAGGGCAGCACAAACTGCACAGCAAGAAGAGTCTTCCACACAAGAAGAGGATATCTAGGAAGCTAAAGAAGAATCATGGGAACAGTACCCCTCAGCAGGACATAGTGGTGATCAGCTGCACGGACGTGGAGGGCCGCATCAGCTGCGCCGACCACGGCCAGGAGCAGGAGATCCTACCTGACAACTTTGTGCAGCAGGAGCACATGCCTGTTGAGACGCATCATATCGCACATGAGGTCCGGCCCATCTTCATCTGCCAGCTGTGCGGCGAGTTCTACGGCGACGAGCAGCTAAAGTTCTACCAGCATCTCAAGCAGCACTACGAGCCGCACATCATCATCGAGAACCCCGTGCAGGACCTCGCCATGGATAAGATAACCAACTCATGCATCGTAGATAATGTAGCAACAATCCCAGACGCAATAGTAGAACTGTCTCTAGAAAATTCCATACCAAAAACAATGTACCAAGCGATGGACAAACACGTTTTATACACGACAAGCGACAAAACGTTTACCTACGCCAACAATAAAGTTCAGTATTCTATGGCAAGTATGGACAAGGAACCGCCGACGGTAGTTCAGGAGAATGAGAAGGCGGATTTGTACGATACGCTGGATAAACTGGACTTGTACAGCTGTGGGAAGTGTAACAAGACTTTCAGAAAGCAGAAGCAGTGTGAAGCACATATCAAGGAGGCGCATTCTAATATGaagTTAGAAGACATGGGCGAGTTCAGCGAGCCCGAGGACCTGATGGAGGGCATCCACGTGGCCGTGGACGAGCCTCAGGAGCACTACGAGCACTCCATGTTGCCGCATCTTACTGTGGAGAATGGACACGCTCACCAGGACAACGTGAGGCACTGGTACGGGCGCAGCGCGAGCGGCCCCCCGAGCGGgccgggcgcgggcggcgcgtcgTGCTGCGCCGCGTGCGTCTCCGCGCCGCACGACTCGCACCATCTCAAGCTGCTGAAAGgtttcattatttttacctaCCTTAAATTATTTTCCCATCACTCACCAGACGAAGTCCTCCGCCGGATCCTAGAGACGGACGTAGTGACGACGGACAGCCAGAACTTCACGGACAGCACGCTGACCGACACGGCCGACACGACCGACACGCCCGACCTGCCGCCCGACGAGCCGCCACCGGACGAGAAGATGGACGACAAGAAGAAACAGAAGAAGTTCGAGTGCCAGCAGTGTCAACGAGTGTTTCAGCATAGGAACAGTCTGCTGTACCACATGTTATCACACAGCAGCAAGCAGCACGTGTGTCGCGAGTGTGGGAAGGGCTTCTACACCCACGCCGCGCTCAAGATACACAAGCGTGTACACAACGGCGACCGTCCGTACAAGTGCGACGTGTGCGGGAGAGACTTCCGGCAGTGGAGCGACCTCAAGTACCACAAGATGTCCATACATTCCGACCAGAAAATGTTCAAATGCGAGTTTTGCGGCAAGGAGTTCGCTCGCAAGTACTCGTTAAACGTGCACCGACGCATACACACTGGAGAGAGGAACTACAAGTGTGAATACTGCAACAAGTGCTTCAGGGCTTCGTCCTACAGGCTGAGCCACATGAGGACACATACCGGCGACCGGCCGCACAAGTGTCCGCAGTGCGAGAAGTGCTTCCGCGTGGCCGGCGACCTGCGCCGACACCTGCTCATCCACGACAAGGTGCGCAACCGTCTGCAAGACGCCAGCACCAAGCTCAAGGACCTCAAGGAAGACAAGAAGCCAGCCATCAAGCAGGAAGACAAGGGAGAACGCCAAGTCAACATCAAGATTGAAGACGTCGAAGTATCCAAGAACATCAAGAAAATCGCCCTCGCGTCGACTACCAAAACACCCAATATCCTCAGAACTGTTCTTGAGAAgaaaaaacctaataaaaagAACCAGATTGTCAAAAAAGGAGCTCCTAACGTTACCATAGACCAACTAGATTCTAACTACACTAATAATGTTGAAGTATTCGATACGCGGCAGGACTCGTACGGGAAACTCAACATAGTGTCTGTCAAGGAGTTGTACAGCGATCCTAACTACAAGCAGGAATTAGATAACCCTTTTACTAAGCAAATTATTTCAAACTACAAAGATGAACAAACTCAGGAGAGAGAATTCGCGATACTTAGGCCGATGTTCAGGAATAACGTGTTATGTGACACTGTTGAACCCGATCAAACTGTGTTTAGAACTCAGAACACTGATGGTAAGATGCAGGTGTACACTCACATAGAGAAAAACAACACTCCAGTTCCTAATTCTCAAGTGTCGCTGAACGATATGCGGCATTTAGAGCGGGAGGTGCGGAGCGACATACACGGAGAAACTACGGAAAACGGTTTCATAGAGCGACTTACAGCGTTGTACAATATACCCGCTGTGTGA
Protein Sequence
MDEAVTHYITSHPADQAVHVDGNALALNVQDDGGSRVAIMHSQTYSASMCRQVSVGDHVVEGQWNDEIMDEGRLAAFVAHITAQQSRGQQQLHHKVHTVRGDVDSSIILDSSMRLFHGQPMDQSQEPIVVEVPPLPPLPPLQEMKRCQENDWFNNKAKSSLKDDSSMIDSDGPVLELGAGASPGQHKLHSKKSLPHKKRISRKLKKNHGNSTPQQDIVVISCTDVEGRISCADHGQEQEILPDNFVQQEHMPVETHHIAHEVRPIFICQLCGEFYGDEQLKFYQHLKQHYEPHIIIENPVQDLAMDKITNSCIVDNVATIPDAIVELSLENSIPKTMYQAMDKHVLYTTSDKTFTYANNKVQYSMASMDKEPPTVVQENEKADLYDTLDKLDLYSCGKCNKTFRKQKQCEAHIKEAHSNMKLEDMGEFSEPEDLMEGIHVAVDEPQEHYEHSMLPHLTVENGHAHQDNVRHWYGRSASGPPSGPGAGGASCCAACVSAPHDSHHLKLLKGFIIFTYLKLFSHHSPDEVLRRILETDVVTTDSQNFTDSTLTDTADTTDTPDLPPDEPPPDEKMDDKKKQKKFECQQCQRVFQHRNSLLYHMLSHSSKQHVCRECGKGFYTHAALKIHKRVHNGDRPYKCDVCGRDFRQWSDLKYHKMSIHSDQKMFKCEFCGKEFARKYSLNVHRRIHTGERNYKCEYCNKCFRASSYRLSHMRTHTGDRPHKCPQCEKCFRVAGDLRRHLLIHDKVRNRLQDASTKLKDLKEDKKPAIKQEDKGERQVNIKIEDVEVSKNIKKIALASTTKTPNILRTVLEKKKPNKKNQIVKKGAPNVTIDQLDSNYTNNVEVFDTRQDSYGKLNIVSVKELYSDPNYKQELDNPFTKQIISNYKDEQTQEREFAILRPMFRNNVLCDTVEPDQTVFRTQNTDGKMQVYTHIEKNNTPVPNSQVSLNDMRHLEREVRSDIHGETTENGFIERLTALYNIPAV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00908231;
90% Identity
iTF_00888594;
80% Identity
-