Mbra026750.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:4372646-4397338[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1 2.6e+02 3.1 0.1 1 17 52 68 52 69 0.79 2 12 0.089 7.4 8.0 0.1 1 23 192 215 192 215 0.97 3 12 0.44 36 5.8 1.2 1 23 222 244 222 244 0.96 4 12 2.2 1.8e+02 3.6 0.6 2 23 249 271 248 271 0.86 5 12 0.01 0.87 10.9 2.2 1 23 282 304 282 304 0.98 6 12 0.00018 0.015 16.4 0.3 1 23 308 331 308 331 0.95 7 12 0.00038 0.032 15.4 0.1 1 23 338 361 338 361 0.96 8 12 0.0014 0.12 13.6 2.7 3 23 370 390 369 390 0.98 9 12 5.4e-06 0.00045 21.2 0.1 1 23 401 424 401 424 0.94 10 12 0.00055 0.046 14.9 5.0 1 23 430 453 430 453 0.95 11 12 1.8e-06 0.00015 22.7 0.0 3 23 464 484 463 484 0.98 12 12 0.049 4.1 8.8 2.0 2 23 491 513 490 513 0.92
Sequence Information
- Coding Sequence
- atgacgtCGGTTTTGCATTTAAAGGTTCAAGATTATGTTTTAGTTTGCATTTGTTGCACGTCCCAAAGTTCTGTTTTAGTGAAGTTTAGTACTTGTAAACACACAGGATTTTTGGCGAATTACATTAAATCGGAGatagacatgaaaaatacatacatttgcGACATTTGCCATCACATGCTGAAAAAGATAGATGCTTTCAAGCGGCAAGTTGAAGAGAGCACAGCTTTACTTCTGAATCAGGTaccaattctaaaaataaaaaaacaacacgaCTTCCAACGCTCGCCCATGTCTATTGTTGGCACTGCGGTGTCGCAGATCGAAATAGTAGTCAAACAGGAACCAATGGATGCTGAGTGTTCAGACGTCGACAATGAGACGCCAAAGGTAGAGCAGGTTTCTATAGACAATGAGACTGAACCTGAGATGGAATTACAGAAGGAGAAGAAAACGGAGAACAAAAAGAAGTCAAAGTATGCAGGAAAGATCGAAGTCGTGATTCTCACCGATAAAGaagtaaaagaagaaagagaacGCATGGCTAAAAGCGAGGCATATTTGAAGCTGCCTTACAAATGTGAAGACTGCATCGTCGGCTTCGAACGCGAGCTGACGCTTGCCAACCATATTGAGAAGAGACATAGGAAGatAGAAAATGGTTTCCAATGTAATAtctgcaagtcagtgtcaggcaaCAAGTTTTCTGCCAGTCAACACTCAAAGACACACATCAGAAGAATGGAATGCATGTTTTGTCGCAAGAGATACAACCGTTTGCAGTCCGCAGTCCAACACTATGACGAACAGCACGCTCCGCCCGGCGCAGCCCTACAACAGGGATACACCTGCCAGGAGTGCAGTTTCACTACCGATTCTAACCGCGCGTTTCGCTACCATATGGACAAACACAAAAAGAAGCACAATTGTGAGATTTGTGGGAACATATTCGCCAACAGTCAAGCACTTAAAGTTCACTTGTACACAGTGCACAAACAATGCTCTCGCGTGTACAAATGCGTGCCGTGTGACAAGTCCTACCGCTCGCGCGCGGGGCTAGAAGCTCATGAACGGTCAGCACACGGCACATCCGACACGCGCGCCTTCTGTGAGGACTGTAAGACGCATTACAGGACCGCGAAGGGGTTGCAGCAGCACTTGACCACTCACTCGCGACATGTCGGCGTGAGTGATAGAAGATTCATCTGTGACGACTGCGGAGCGAAGTTTGCTACGAAGAGTACTTTACAGGTGCATATCAGTTGGGAACACATTAAGGTCAAGACTCATCGGTGTCCGAAATGTACCAAGGTGTTCAAATGTCTTAGCAATCTGAATCGCCATGTTAACTACGTGCATAACAAGAAAAAAGCGCCTCGCAACAAAATCTGTGATTATTGTGGAAAAGCCTTTATTACGCGAGCCGTCTTAGAGGCTCACATCAGAACACACACAGGAGAACGACCGCTGCACTGCACGCTTTGTTCCGCGACGTTCGCGCATCCAGCGGGCCTGTATAAACATAACAAACTGAGGCATACtaccaaataa
- Protein Sequence
- MTSVLHLKVQDYVLVCICCTSQSSVLVKFSTCKHTGFLANYIKSEIDMKNTYICDICHHMLKKIDAFKRQVEESTALLLNQVPILKIKKQHDFQRSPMSIVGTAVSQIEIVVKQEPMDAECSDVDNETPKVEQVSIDNETEPEMELQKEKKTENKKKSKYAGKIEVVILTDKEVKEERERMAKSEAYLKLPYKCEDCIVGFERELTLANHIEKRHRKIENGFQCNICKSVSGNKFSASQHSKTHIRRMECMFCRKRYNRLQSAVQHYDEQHAPPGAALQQGYTCQECSFTTDSNRAFRYHMDKHKKKHNCEICGNIFANSQALKVHLYTVHKQCSRVYKCVPCDKSYRSRAGLEAHERSAHGTSDTRAFCEDCKTHYRTAKGLQQHLTTHSRHVGVSDRRFICDDCGAKFATKSTLQVHISWEHIKVKTHRCPKCTKVFKCLSNLNRHVNYVHNKKKAPRNKICDYCGKAFITRAVLEAHIRTHTGERPLHCTLCSATFAHPAGLYKHNKLRHTTK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -