Mbra023955.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- ZFY
- Assembly
- GCA_905163435.1
- Location
- LR991012.1:3061257-3065777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.25 21 6.5 8.2 1 23 149 172 149 172 0.97 2 18 0.0003 0.025 15.8 0.9 1 23 181 204 181 204 0.96 3 18 0.033 2.7 9.3 0.4 2 23 217 239 217 239 0.97 4 18 0.0004 0.033 15.3 0.8 1 23 248 271 248 271 0.97 5 18 0.00011 0.0092 17.1 2.8 1 23 283 306 283 307 0.96 6 18 0.00014 0.012 16.8 0.7 2 23 335 357 334 357 0.97 7 18 0.0014 0.12 13.6 1.2 2 23 367 389 366 389 0.96 8 18 0.08 6.7 8.1 1.2 3 19 395 411 393 414 0.92 9 18 0.0006 0.05 14.8 0.5 2 21 419 438 418 441 0.94 10 18 0.38 32 6.0 2.2 3 23 451 472 450 472 0.93 11 18 0.00079 0.066 14.4 3.5 1 23 477 500 477 500 0.94 12 18 0.00011 0.0096 17.1 3.1 2 23 512 534 511 534 0.97 13 18 0.0019 0.16 13.3 1.3 1 23 561 584 561 585 0.93 14 18 0.99 82 4.7 0.2 2 23 591 612 590 612 0.89 15 18 0.019 1.6 10.1 1.4 2 23 618 639 617 639 0.97 16 18 8.8 7.4e+02 1.7 1.8 3 23 647 669 645 669 0.88 17 18 0.019 1.6 10.0 0.1 1 23 705 727 705 727 0.97 18 18 0.084 7 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- ATGGATCTAGATATAAAggttaaaattgaaaaagatgACACAAGAAAAGACCCTACCTCATTTTTGCCCGAGGAGCCGATGTCCtatgaaattaagaaaaaaaagaagaagaaaaagaagaagcaagAAGATCCGTTTAAAGATATTGATGACAAAATGGATGTTAAAATTGAACCTATAACATTGTTGGATCCAGAGGTGAAAATAAAAGTAGAGGATATTGAAGTGGAATTGGATTTTAATGATTTCGGAGACAACGGTCTGATGCCCGAAGATACGTATAATGCTGAAGAAGAACGAGCCGTGAAGATAGAGCCACAAACAAACCACGACGCCGTCCTTCTCACCTTCGAGAGCGTCATCAGCGATAAACCAATAGTGGCCAATAGCACTGAAATGTTCCCATTCTCGAGCAATGCCCTCCCCACCGAACAAGCCCCCAACCACGTCTGTAAAGTCTGCCATCTAGTCTTTCAATCTCACAAAACAATGCGGATGcatcaaaaaagaaaacacaagtCGTTCAGAAAGTCCTTCAAGCACATTTGTGATTACTGCGGCATGTCCTACGAAATGAAGAACAGTTTAGTAGCTCACATAAAGAGGAAACATGGACCTGATTCGCAACCAGACGACAGAGAAGAACGGACTTGTGAGATATGTGCTCTAGTGTTCAAAGGGATGCCTCGTTTGCGAATGCATATGAGGAGAAAGCACGGATCGTTCCAGGAATCTTTCAACCACGTTTGCGAAGACTGTGGTTTAACCTATGATAAATACAGAAGTTTGATAGTCCATATACAACGCAAACATTCtaataatcagaagccagaaatcaaCCGATGGTACAATTGTCCGTTTTGTCCGAAAGTGTTTACTAAAAGAGAGACTTATGCCAGACATGTGCAGAGAAAGCATCACGTGTCAGATGAGAGTATTAAacaagaaaatgaaaatgaaacagATTTAGTGAATTGTAAGAATGAAGAAACTGGTGAGATTACTTGTAAAGAATGCCCTCTAGTCTTTTCTTCTATCAATTTCTTGAAACTTCATATGCGAAGGAAGCATAATGCGTTAAGAGATAACTTCCGATTGAAGTGCAGGATTTGTAACTTGTCTTACGATAAAATTGAGAGTTTGAAAAGGCATGTGAGGAGAAAACACGACAAAGGATCTCACTGTGAAGTTTGTAACAAACAATTTGATACGCGAGAGATGTATCTCAACCATTCTCACGTGAAAGCTATAAAGGAGTGCAATATTTGCGGCCTGATATTTGCGTCACAAGGTGGCTTAGCGAAACACTTGAGGTGCACCCACAAAATAGACTCACCCAAGACAGTATTCTGCAATCTATGCAACGAAGGTTTTCACGACAAGCGGCAGCTTAAACCGCATTTCATGAAAGTGCATTTAAAAGTATCTTACACTTGTAGGTACTGCAAAAAGATATTCAAAGCAAAAGAGAGTTATCGACGGCACATATTATTCAAACATCCTAATGGGAATCATTTCAATGCACAGAGGCAAAAATGTGAACAATGTAGCGAGACTTTTAAGGACGAATTTGACCTTTGTCGTCATATAAATACGTTCCACGGTCGCCCTGAGGATATGACGAAAGAGGACAGAGAAATAGTGCAAATAAAAAGAGAAGATCCCGATATTAAGGACTGTTTTCAGTGCACCAAGTGTCCTGAAACATTCTTAACTTGGGAACAGTTGAAGTTACATTACGAAGCAACCCATCACAATATAGAAGAAACTCAGTGTCAAATGTGTGGGGAGATACTCCCAGGAAACGAATTACAAAAGCATATAAAGAGTCGTCACACAGATACTGAGATGCAGTGTAAATACTGTGAATTTAAGACCAATATTAGAGTTAGTTTAACACAGCACATGTTACGGCATAAAAATGCTGAAACAATTCACTGTGAATACACTGGTTGCAGGTACAAAACGTTTTACGAAGGTGCTATGGAGAAACATAAGAGAAAACATGCAGATTTAGGAGTCAAACTCCAATGCACGCAGTGTCCGTTCCAGTCTATGAACAAATACATCTTGAAATATCACGAAGAAGCTCATGAAACTGGTAAGAAACGATATATGTGTGATCAGTGTGATTATGCAACAATCCTACCAGCTAATCTTGTCCAGCATAAATATAAGCATTCAACGGAAAAGAGGTTTAAATGTGAAGTGTGTCCATTCgcaacaaaatataatacatcACTGCGGTTCCATGTTAGGAAAAAACACTGTGATCTACCGACATTcagttaa
- Protein Sequence
- MDLDIKVKIEKDDTRKDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIDDKMDVKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLMPEDTYNAEEERAVKIEPQTNHDAVLLTFESVISDKPIVANSTEMFPFSSNALPTEQAPNHVCKVCHLVFQSHKTMRMHQKRKHKSFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPDSQPDDREERTCEICALVFKGMPRLRMHMRRKHGSFQESFNHVCEDCGLTYDKYRSLIVHIQRKHSNNQKPEINRWYNCPFCPKVFTKRETYARHVQRKHHVSDESIKQENENETDLVNCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALRDNFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHILFKHPNGNHFNAQRQKCEQCSETFKDEFDLCRHINTFHGRPEDMTKEDREIVQIKREDPDIKDCFQCTKCPETFLTWEQLKLHYEATHHNIEETQCQMCGEILPGNELQKHIKSRHTDTEMQCKYCEFKTNIRVSLTQHMLRHKNAETIHCEYTGCRYKTFYEGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -