Mbra026770.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- ZIPIC
- Assembly
- GCA_905163435.1
- Location
- LR991017.1:4750231-4761530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.057 4.7 8.6 1.1 1 23 217 240 217 240 0.96 2 20 0.12 10 7.6 0.2 1 19 246 264 246 265 0.96 3 20 2.1 1.8e+02 3.6 1.9 1 23 272 295 272 295 0.96 4 20 0.076 6.4 8.2 1.5 1 23 299 322 299 322 0.96 5 20 0.00048 0.04 15.1 2.9 1 23 325 348 325 348 0.98 6 20 5.8 4.8e+02 2.3 0.5 1 23 351 374 351 374 0.95 7 20 0.37 31 6.0 0.1 3 20 382 399 381 401 0.92 8 20 0.37 31 6.0 0.1 3 20 435 452 434 454 0.92 9 20 0.37 31 6.0 0.1 3 20 488 505 487 507 0.92 10 20 0.37 31 6.0 0.1 3 20 541 558 540 560 0.92 11 20 0.37 31 6.0 0.1 3 20 594 611 593 613 0.92 12 20 0.37 31 6.0 0.1 3 20 647 664 646 666 0.92 13 20 0.37 31 6.0 0.1 3 20 700 717 699 719 0.92 14 20 0.37 31 6.0 0.1 3 20 753 770 752 772 0.92 15 20 0.37 31 6.0 0.1 3 20 806 823 805 825 0.92 16 20 0.37 31 6.0 0.1 3 20 859 876 858 878 0.92 17 20 0.00011 0.0091 17.1 0.1 2 23 928 950 927 950 0.94 18 20 2.2e-06 0.00018 22.5 0.7 1 23 956 979 956 979 0.98 19 20 0.00041 0.034 15.3 0.7 3 23 990 1010 989 1010 0.97 20 20 0.00026 0.022 15.9 0.1 1 23 1016 1039 1016 1040 0.94
Sequence Information
- Coding Sequence
- ATGGatgaaactgaaataaaatgtgaaTTTCCTGATTATGAGGACCACTGTTGTGTTTGCCTTAGTGTAGGAAGAAAATTATCTCCATTGGGAGAATATAGCAGCGTTTTTAGAAAAATTACTTCAGACATTCAAAAtcatAACCAAACACCTTTAGAAGAAATAAAGCTATGTTGGGAATGCAAGGCATTTCTGCGAAGAGCTAGTATATTTCAACAGCAGGTCAACAAAGCCAACGAAATGCTACAAATGGGgcagagCTACCTCTATGGCACTCAATCCAGCCTAACGacaataatatttaatgattCTCATCCACACACTGTTTATGTtaacaatttaaatgtaaaagtacagttagacaaaaaaatatgtgacaaaaatagtgatgatgatgaaataaacgatacatttgatgattttggtGATGACTGTCCTAAAATTGAAGAAGTAATGAAACAAAGAACAGAACAAATTAAACCCAAAAATCGCTGGGCGAAAAAAAGgactttgcaaaataaaaagccgaaattcaaaattatcaCAGAAGAAACTGAAGAATGTTTTAGAAGAGTACAAATTGATGATGAAGAGTTACAGAGCTTACTGAACACTGAAAGGGACAGCGTATATTTTAAGACTAAAAAGTATAAGTGCGAGAAATGTGTTTTGGCGTTTTCGAGTCAAGAGATTCTGGACAAGCATAAAAACAAGTTTCATAttaagttaacGAAATACACCTGTGATATTTGTACTTCAAGAGTGTCAAGTAAATATCTCCTGTCGCAGCATGTATGGGACCATTACTATAAGTATGTGTGCGCATTGTGCGACTTCGCCTGCCTCGATAAGTCGCAAACAAGGTGGCATCGTCAACGAAGACATAAAAAAGTGTTTCAGTGCTTAAAATGCGAATTGAAGTATGGGAGTCGTTGGGAATTCTTCAAGCATTACAAGGAGTGGCATGAGAAGTTCGTCTGCGACTACTGCGGGATCACCTTCAAGATGAGGTACTGCATCAAAGACCATATCAGaaaaCAGCACTCCCCCTTCGAATGCAAGCCGTGCAACAAGCGCTGGGCTCGCTACAACGGTCTCTGGCTGCACAACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGTGGCACCTCGCCAACAGCGCCACGCACACGCAGCACAAGAAACATAGGTCAGTATCCCGCTCCCGCTCCCTAGGTCACTACAAGACGTCCCACAGCGCCGGCGTGGCCGCGTACTGCGTGGAGTGCGACAAACAGTACCGCGACGTGTACCGCTACCGGGTACCCTGCCCGGATTGCGACAAGGTATTCTCAAAGAAAATCTATATGAAAGACCACTACAACCTGGTGCACCTCAAGTTTTACAAGTACCGATGTGAACAGTGCGATAAAAACTTCATTCGTAACGCCGAACTGGTCAAGCACACCCGTCGCGTTCACGAGGGCATACTGCCGCCGAAGAACAAGATCTGTTACATGTGCGGCAGGGGCTTCTCTACCAACAAGATACTAACCAACCATCTACGGACTCACACCGGAGACAAACCTTTCGCCTGTTCCATATGCAACGCTCGCTTCGCTCAGAGCTCGGCTTTGTCTGCGCATGCCAGAGCCATACACCATAGTGTACACAAGCAAGCGTAG
- Protein Sequence
- MDETEIKCEFPDYEDHCCVCLSVGRKLSPLGEYSSVFRKITSDIQNHNQTPLEEIKLCWECKAFLRRASIFQQQVNKANEMLQMGQSYLYGTQSSLTTIIFNDSHPHTVYVNNLNVKVQLDKKICDKNSDDDEINDTFDDFGDDCPKIEEVMKQRTEQIKPKNRWAKKRTLQNKKPKFKIITEETEECFRRVQIDDEELQSLLNTERDSVYFKTKKYKCEKCVLAFSSQEILDKHKNKFHIKLTKYTCDICTSRVSSKYLLSQHVWDHYYKYVCALCDFACLDKSQTRWHRQRRHKKVFQCLKCELKYGSRWEFFKHYKEWHEKFVCDYCGITFKMRYCIKDHIRKQHSPFECKPCNKRWARYNGLWLHNKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRWHLANSATHTQHKKHRSVSRSRSLGHYKTSHSAGVAAYCVECDKQYRDVYRYRVPCPDCDKVFSKKIYMKDHYNLVHLKFYKYRCEQCDKNFIRNAELVKHTRRVHEGILPPKNKICYMCGRGFSTNKILTNHLRTHTGDKPFACSICNARFAQSSALSAHARAIHHSVHKQA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -