Mbra002181.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR990988.1:8552553-8554973[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-07 7.2e-05 23.1 0.1 4 40 18 54 15 60 0.88
Sequence Information
- Coding Sequence
- ATGGTTCGGcaatatgtaagaaaaaaagaTGGACCTAATTGGAGTAAACAAAAGCTAGAAGAGGCTGTTGAAGcagttaaaagaaaaagaatgtcgGGATATGAAGCAGCAAAACATTTCCAAATATCACGAACGACAATAATGGACCATGTCACTGGTCGAAGAGGACAAAAATCTAATAGTCTTGGCAGACCAACCGCACTTCATACAgaagtggaaaaaaaattagcCAATTCTTTGCATGTTATGGAAAAGAATGGCTTCGGACTATCACGTAAGGAAGTGATGGAGCTTGTCTCAGATTATATAAAAgcgaacaaattaaaaaacccTTTTAAAGATGGAGTTCCAGGCCATGACTGGTTCAACAACTTTGCTACTAGGAATAATTTATCACTCAAGAAGCCGCAAGCTGTTGAATATTCTAGGAAAAAAGCGGCTGACCCATTCACTATAGACGAATATTTCAATATCCTTGAAAAAACGATCAAAGAATTGGGCCTGGAAACAAAACCAGACAGAATCTGGAATATTGATGAGACGAGTTTTTCAAATGACCCGAAAAAAACAAAGGTAGTTGGGATGCGTGGTTATGCTTCTACACGAACCACGGCCACATCCGGCAAAGAAAATACGACAGTTTTATTTGCTAGCAATGCAGCAGGTGGAAAGGGGCCtccatttatcatttataaagCCAAAAATATTTGGAGCGAATGGACTTCCGAAAAAGCGTATCCAGGAACGTTGTACTATGCTACTAAAAATGGCTGGATTGAATCCGATGCTTTTGAACAATATATATCTAAAAGTTTTATACCCATGATTAAAAACAAGGAAGAACCAACGCTTCTTATTTATGATGGACACAGTACCCATGTACAATTAAGTGTTATAGAAATAGCCAAGAAAAATAACGTCACTATCATCAAATTACCAGCACACTCTAGCCACCTACTGCAACCGCTAGACTTGGCTGTTTTTAAAGCATATAAGGACAGATGGGACGAAGAAATGGTGAAGTGGCAAAGATGTCATTTTGGTGAAAAGTTACCAAAGAAAGAGTTTGCCGTTCTGATTGGCGAGGTTTGGGAAAAATTAGATCCTCAGATCATTCGAAATGGTTTTAAGAAAGGTGGCATAAGTCCTTTTAATAGAGATGTGATACCAGAGGGAAAGTTAGAGCCGAATGCTTTGAAGCGATGGCAAAGTCATAAGAAGAAATCTCTTATAATAAATCATTCTTACTACACAACAGATCTTCTTTCTTCTACAAAAAATCCACAAACATTGAGCGCAATCTgcctaaaacaaataaattctattaTCGATAACGTAACGAGCGCTGATGTGTTAACGCATTTACAGGTAGCTCTGAGTTCAAATCCACCTGATCTGCAGGTCAATAAATCGTTCGAATTTTCACAAAGTGCAGAAAATTGTTCGTTTGAAGATTTGCTTCtggaaaaaatgaaaattggcgaaagtaaaattaaaaagaaaaaagtaaaaatcggGAGTGCTGAATTGATAACGCATGATGATGTGATAAGAAAATTAGAAGAAAAAGAACGGGAGAAACATTTGAAAACAACGAAACAGAAGAGGATAAAAAACACCACAACATCTaatataacaaagaaaaaaccgCCGTCTGTCAAAACTGACAACAAATCTCCTTTGGCATCCCCAAAGGCCTCCACATCAAAATGCGTACCAACAATAACTATTGTAGCAGACAAGTACTTATCTGAAGAGGAGAAATTTGTTTTTGAAGAACTGATAACGAAGACAGATGAAATATGTTTAATAGAGAAAGATACATTGTTAAGCGTTAAGAAGAATGGAAATGAAAACGTAAAATTAGAGAGAACCAAATGTGAGAAAATTGAAAAACAGGGTGTGTtgtttaaatctaaaaataaaaaatgtaaaaccaaaaagaagaaaacatatAGTTCAGATGAAGAGAGTGACTATAGTGTACACGATTCCTCTGATTTAGAATACTTGGGAGATTATTTAAATACGTATTTATCTGGTGATGCTGATgaaacatcaatcaatcaagAAAATATTGACCCACAGTTGACATTTGGACTCAGCGATCTCGATTACATCGCTGACACTACTACTAAAGCTAAAAAAGGTGATTGGGTTTTGGTTAAATTTTGCtctaaaaataacatcaaacaTTATGTTGGTGAAGTACTTAACTTGCAAAATAATCTCCCAACAATAAAATACGTGAGGAGAGTTCGAAACAGTAAGCATAATTCTGTTTTTACATATCCAAACATACAAGATGTTTGCGAACTGAAGCATATTGATGacataattacaattttaccCCATCCAACAATCTCTCGCCGGGgccaaattattttcaaaattgagttCGGAAATTACAATATACAGTAA
- Protein Sequence
- MVRQYVRKKDGPNWSKQKLEEAVEAVKRKRMSGYEAAKHFQISRTTIMDHVTGRRGQKSNSLGRPTALHTEVEKKLANSLHVMEKNGFGLSRKEVMELVSDYIKANKLKNPFKDGVPGHDWFNNFATRNNLSLKKPQAVEYSRKKAADPFTIDEYFNILEKTIKELGLETKPDRIWNIDETSFSNDPKKTKVVGMRGYASTRTTATSGKENTTVLFASNAAGGKGPPFIIYKAKNIWSEWTSEKAYPGTLYYATKNGWIESDAFEQYISKSFIPMIKNKEEPTLLIYDGHSTHVQLSVIEIAKKNNVTIIKLPAHSSHLLQPLDLAVFKAYKDRWDEEMVKWQRCHFGEKLPKKEFAVLIGEVWEKLDPQIIRNGFKKGGISPFNRDVIPEGKLEPNALKRWQSHKKKSLIINHSYYTTDLLSSTKNPQTLSAICLKQINSIIDNVTSADVLTHLQVALSSNPPDLQVNKSFEFSQSAENCSFEDLLLEKMKIGESKIKKKKVKIGSAELITHDDVIRKLEEKEREKHLKTTKQKRIKNTTTSNITKKKPPSVKTDNKSPLASPKASTSKCVPTITIVADKYLSEEEKFVFEELITKTDEICLIEKDTLLSVKKNGNENVKLERTKCEKIEKQGVLFKSKNKKCKTKKKKTYSSDEESDYSVHDSSDLEYLGDYLNTYLSGDADETSINQENIDPQLTFGLSDLDYIADTTTKAKKGDWVLVKFCSKNNIKHYVGEVLNLQNNLPTIKYVRRVRNSKHNSVFTYPNIQDVCELKHIDDIITILPHPTISRRGQIIFKIEFGNYNIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00951767; iTF_00951768; iTF_01264481; iTF_00794509; iTF_01076429; iTF_00951765; iTF_01367829;
- 90% Identity
- iTF_00951768;
- 80% Identity
- -