Mbra019121.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR991006.1:1102050-1102808[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 1e-05 25.9 0.1 4 38 13 47 11 50 0.90
Sequence Information
- Coding Sequence
- ATGGAGCCGCAGAAACGCAAGCAGTACGCCTCGGCTAAACTAGAAGCTGCGCTTCTAGCTATAAATGAACGGACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCGAGGACAACTCTGCGTGACatgagaaataataaatatataaatgaacattGTGGAAAACAAACTGTTTTAACGAAGGaggaacaaaaaaaactggtagACTGGATTTTCTATCTCGGGAAGtcaggttttcctgtaactaaGGACCAATTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAAATCGTTCTAATCCTTTTAAAGATGGTGTTCCCGGAAAAGGATGGTTTCTTAAGTTTATGGCGAGGCATCCTACCATTTCAAGGCGAATTACTCAGAATTTGCCTACAAGCCGTACACACATTAAAGAGGAAGCTGTAAGAGCGTGGTTCAATCGAGTACATagttattttgaacaaaataaccTTCTTGATGTTTTGGAAGATCCTAGTCGGATTTTTAATTGTGATGAGACCGGATTATTTTTGTGTCCCAAAGGAAAACAGGTTCTTGTCCGAAGAGGCAGCAAGAAAGTATATAGTAGAGTGGCCAATGGCGAAAAGGAGTGTTTAACAGTGCTAGTAAATGTGTCTGCAGATGCTGCAATAGCATCTCCCATGGTCTTACATCCATACAAGCGTTTACCAAAAAACATTGTTCCAACTGTACCATCTGGATGGGGTATCGGTCACACTGAGTCAGGATGA
- Protein Sequence
- MEPQKRKQYASAKLEAALLAINERTSIYEASKTYGIPRTTLRDMRNNKYINEHCGKQTVLTKEEQKKLVDWIFYLGKSGFPVTKDQLLETVAKLVENLNRSNPFKDGVPGKGWFLKFMARHPTISRRITQNLPTSRTHIKEEAVRAWFNRVHSYFEQNNLLDVLEDPSRIFNCDETGLFLCPKGKQVLVRRGSKKVYSRVANGEKECLTVLVNVSADAAIASPMVLHPYKRLPKNIVPTVPSGWGIGHTESG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367672;
- 90% Identity
- iTF_00952644;
- 80% Identity
- -