Mbra001739.2
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- -
- Assembly
- GCA_905163435.1
- Location
- LR990987.1:34946058-34946711[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-12 5.2e-10 39.6 0.0 3 39 17 53 15 58 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGCCACTACCAAAGGAAGACAGAACGTGCCAAATGGAGCTTGGAGGATATGGAAGCAGCCGTAAAAGATGTGGCTAGTGGCAGATTAAGCTGTAAACGGGCCGCTCTTGAGTACAATGTGCCACGATCAACTTTGCAGCGAAAACTCGAGGAGTACAAATCAAAACAGTACTTATCACCAACAAAACTAGGTAGTTTTAGACCAATATTTTCAGCTGCTCAAGAGGAAGAGTTAGCTTCATATATTAAAGACATGGAAGGTAGATTGTTTGGTTTGTCTCCAAAAGAAGTTCGTCAGCTGGCCTATCAATtggcaacaaaaaataacatccCACATAATTTTGATCCGACGACTCAAACCGCTGGCGAGGATTGGTTGTCAAATTTTCTGAAACGCAATTCTTCTTTGTCCCTGCGCAAACCTGAAGCCACATCCGCTGCTCGAGCCATGGGCTTCAATCGCCAAGCTGTGGAggctttctttaaaattttaatcgAGACAGTcgataagtttaaaattacagCGGATAAAATTTATAACGTTGATGACAACTGTTGCAAAAAGCCTTGGAAaagtagtggccaccaaagGCAGGAAACAAGTCGGATCATTGTCATCGGCAGAGCGTGGGCAACTGTTTACAGTTGA
- Protein Sequence
- MVRHYQRKTERAKWSLEDMEAAVKDVASGRLSCKRAALEYNVPRSTLQRKLEEYKSKQYLSPTKLGSFRPIFSAAQEEELASYIKDMEGRLFGLSPKEVRQLAYQLATKNNIPHNFDPTTQTAGEDWLSNFLKRNSSLSLRKPEATSAARAMGFNRQAVEAFFKILIETVDKFKITADKIYNVDDNCCKKPWKSSGHQRQETSRIIVIGRAWATVYS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726220; iTF_00667286; iTF_00123287; iTF_01221435;
- 90% Identity
- iTF_00726220;
- 80% Identity
- -