Mser013446.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:9916209-9920598[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.1 7.3 7.7 3.1 1 23 75 98 75 98 0.93 2 20 0.02 1.4 10.0 2.3 1 20 103 122 103 126 0.89 3 20 0.038 2.7 9.1 0.4 1 23 132 154 132 154 0.97 4 20 0.00045 0.032 15.2 0.9 1 23 160 182 160 182 0.99 5 20 0.00011 0.0075 17.1 2.0 1 23 188 211 188 211 0.97 6 20 1e-05 0.00071 20.4 2.0 2 23 223 244 222 244 0.98 7 20 1.4e-05 0.001 19.9 1.1 3 23 252 272 251 272 0.98 8 20 3.2e-06 0.00022 21.9 0.4 1 23 278 300 278 300 0.97 9 20 1.4e-05 0.001 19.9 1.8 1 23 306 328 306 328 0.98 10 20 0.00053 0.037 15.0 0.1 1 21 334 354 334 355 0.96 11 20 0.017 1.2 10.2 0.6 1 23 732 755 732 755 0.95 12 20 0.056 3.9 8.6 1.8 3 21 784 802 783 803 0.95 13 20 0.021 1.5 9.9 2.6 1 23 894 916 894 916 0.95 14 20 1.9 1.3e+02 3.8 1.4 1 11 958 968 958 972 0.93 15 20 1.5 1.1e+02 4.1 0.5 2 13 1110 1121 1109 1125 0.86 16 20 0.29 20 6.3 4.3 1 23 1156 1179 1156 1179 0.96 17 20 0.72 50 5.1 0.6 2 23 1195 1216 1194 1216 0.94 18 20 0.32 22 6.2 1.2 3 23 1248 1268 1246 1268 0.95 19 20 0.031 2.2 9.4 0.9 2 23 1279 1300 1278 1300 0.95 20 20 4.4 3.1e+02 2.6 0.7 2 16 1305 1319 1304 1321 0.86
Sequence Information
- Coding Sequence
- ATGGGCTACGTAAATCCGTTCATTTACCCGACaggaataaaaaacaaaagagttggcaaaaattcaaaaacgtcTGAAAATCCTGCAAACAAGTGGTCTTGCATAATCTGCAACGACGTATTGCACAATAAGGAAACTTTAATGGATCATTATGAGCAGCACAAGAATGAAATTGAAAACAACACCGAACAAGACGCTCAAACAGAAAACATGTGCAGTTACTTTAAATGCATCATATGCACACAAGAATTCACATCATCGCACACCTACGAAAAGCACTTGGAACAAAAACATGGGGAAAATTTTTACGCTTGCGacgtttgtaataaaaattacaaaaacgcTTTTCAGTTGTGTCTTCACAACTTTAACGCTCACGCCACCGATGGAGAGTACAAATGTATAGTCTGTGATTTTAGCACGGGTGTAAAAGAGACCTTACGGACTCACATTCAAACTCACGAGAAAGATACAAATTATCAATGTGAAGTTTGTGATAAAAATTTCCTAACTTCCTCATGGTTTGAGGAACATAAGAATACTCACATTGGAGCGATGCCTTTTCAATGCGAAATATGTTTCAAGAGCTTTCCATATTCTCGTTACTTAATTTCTCACAGAAAAAGTCAACACCCCGATATGTACTCAAATGTGGTCTCAATCAACAAGTGCGATATATGCGACAAACAATTTGCTCACAAAAAGAGCTTAATTTTGCATATTCGATCTCACACCGGTGAAAATAGCGTTTTATGCGATGTTTGTGGCAAAAGCCTATCAAGTTCGGAACATTTGAGACAACATTTGCGTATTCATAGCGGTTACAAACCTCACGTTTGTGCAATTTGCGGGAAAGGTTTTGCGAAAAAGAGTAACTTGACCTTACACGAGCGGGTTCACACTGGCGAAAAGCCTTACGTTTGTGGAAGTTGCGGAAAATGTTTTTCTCAACGTTCCACTTTGGTTATACACGAACGTTATCACTCGGGAGATCGCCCTTATACCTGCCAGTTGTGCACAAAAGGTTTTGTTTCTAAAGGACTGTTGAGCGTCCATATTAAAAGTTGTTCTAGATTAATCGACTTAACATCTGATACCTTGTTAAATAGTTCAATTTGTAACGATAAATTGGCATACGTAGCTGATTCGACGTCCGATCTAATAGTAATAGATGGCCTAGAAGTGACAGTAGAGAGTGTGTTAAATCTAGAAGAAGCCGATGTGCCTGTTAATGTTACACAATGTGAATCCACAAACGAATCTACTTCCACGCCTAATGAAATAAGTGCTGAAAAACATTCAGatgcaataattattgtaattgatGACAATCCCGAAGATGTAAGTACGCCCAACCAACTGAAAGAACACAGTTAtgccggaaattacaaaagtaaggTAGAAAAGGAGAAGGAATTAGCAGAGAAAAGGGTAGTTAATAATTTCGTTTCTAAAGCtacgcaaattttaaaaacaaaactaaatggATCTGAACCAATGAAGAAACCGTTTTTATTAGTTAGAAATATAAACGAATTAAGGGATAACGAAATTCCTGCAGTAAAGCAAAAGAAACGGGCGTTTATCAGCGAAATTGTTCCTCCTCCATCGACGCATTTAGATTTGCCTTTAAGAGTCTACCAAGGAGCTGTCAAACTTCAAGAAGAAAAGGAAAGTTTGTTAACGGAAGACAATTTGTTGGTTAATAACATGTCATTTATAACCGAAAATGTTTGTGTTAACGATACCGAAGTGGAAGTTGATGAAAAGATAACACAAAATGAAGAGCCTGTACCAACAACAGTAGAAATTGAGATAGAAGGGCCAGAAAATGAACACAACTTTGAAGACATCGAAATGATATTGTCAGATTTGGAACGTAAAAAATCACTCGCTCAAAGTAATAAAGAAAAAGAAGTTAATCCAACGGAGTTGTTGGAAGATTGGAACAGCGAAGATGAAGATGTTATTATAACCACACAACCACAGAGAGAGGTAGAAATAATCGAAATCGATTGTGAAGAAGACGATAATAGAGATGGCGTATCGACTAATTCTGAAACCATCGAAGGAAGTAATTTTTCGTTCGAGTGCCGAGCGTGTTCTCACatcttcaaaaatgtcaaacaAAGAAATTTCCACGAGTTAGTAATTCACAATAAAACGGCAGAAAGTGATTCGTTTATAATGGAATTTAAATGTTTAGTGTGTTACCAATCGTTCAAAACTTGGAATGGAGTAGTGTCTCACGTTTCTAAAAATCATCCCAAATGGGAAGGAAAAGTTTACGGTTGTTTGAGGTGTAAAAAGGGTTACACTTCACAAGAAAATCACGTCCACGAATTACTTTGCCAAAAGTGCGGTAAAATGTGTGGTAACTCTATTGAGTTAAATGACCATCAATGTGTAGAGAACGATAGCGAAAAACCGAGCAAGCAGACAAATAGCTCCCTCTATTCTTGCATTTATTGTACCGCAGAATTCGATTTGATGATTAAAACTAAACGCCACGTTGAAATGAAGCACAAAAATATCCACAAACCATTTTATAGATGTAACAAAAGTGGTATTCATTTTCCAGTTGCTCCAGACGAACAAGCTATTTATAAACAAACCGTCGAAGATGGTGTTCATCCAAATGCAGATCAAAATATGGACGACGACGATGATGGAGAAATTTACGAATGTATATTTTGTGAGGAACGATTTACAAACTGCGATTCTGCCAGAAATCACATGAAAACGCACGGTGAAAGTGCCGCTCATAGACGATGGAGTTACATGTGTGTTAAATGTTGTAAATGCTTCACTAGTTACGAAGATACCGTATTTCATGTGAAATGGGTTCATGGTAAATCGAAGTTACTATCTTACTATTgtcaattttgtaataaaaaatttcgcATTTATGAAGCACATTCCCACGATAAAGCTAAAGCGATAATAACTCATGCACCAATTCACGTCTTTAACTGCATATTTTGTAATACCGGTTGCAAAGAATACGGTGATATCATAACCCATTTGGAATCGAAGCACGCGAATGTTCTTGAACCGGAATATAGGTGCCACAGGTGCTGTAAAAACTACTCTTTAGAAGAATATCACGAACACGATGGAGTGGTATTTCAAAGAGGAGTTCATATCAAAAGACCTAATAAAGCCATGAGGCGAAAATTAGCACTATTACAAGTCTTCACCAAATCTTCAACGACCGTTACCAATTATTACGTTACCGTACACTGTGATGGTTGTTTCACACTTTACCAAAACAAAAAAGacgaagttaaaaaaataacttccaACGATGTCGTAAGAGCCGAGTCTTCTTGCCGAAAgtgcaaaaaacgattttccGACGTCGAAAATCGTCTTCACTCAAGATTATTTAATACGAGCGTAAAAGAAGACTTCGATGTAAACATACCTGGTACgtcaaaacaaaaaatttccagCTATCAAAATTTCATGTGCTTTTATTGTGGATGTCAGTTTAAGAATTACCATAGGATTCTCGAACACATCAAAGTGGCTCATAAACATATTGCTGAAAAGAATAATCCAATTCCCGAAGAAACGAAATCGTGCGTTTTATGCCAAAAAATTGTCAACAAAAAAGACTTATTCGCTCACACCAAGTCCATTCATCCGGGAAATTTCTGTCTAATATGTTTCGAAgtttttgataaagaaaaaattcatatttgttCCAAATTGAGTTCCATCAACATGAAAATTGCTTGTCCTCGATGCTTAAGAGTGTTCGATTTCGAAGGCAATTATTTGCACCATAAGAAGTTTCACGAAGCTCAAGATGTTAACGATTTAAGATGGTGTTGTTTCATCTGCGAATTAGCTTTTGGAAGTCGTGATCTTCTTGATAGGCACGAGAAACGTCATAACACTTTTCAAGAATGTTCCGTATGTTTTAAGAAGTATAAATTTCCTTCTTCGGTCGAAAAATGTAAACTAATTCATCAAAATTTTGTGATCAACTAA
- Protein Sequence
- MGYVNPFIYPTGIKNKRVGKNSKTSENPANKWSCIICNDVLHNKETLMDHYEQHKNEIENNTEQDAQTENMCSYFKCIICTQEFTSSHTYEKHLEQKHGENFYACDVCNKNYKNAFQLCLHNFNAHATDGEYKCIVCDFSTGVKETLRTHIQTHEKDTNYQCEVCDKNFLTSSWFEEHKNTHIGAMPFQCEICFKSFPYSRYLISHRKSQHPDMYSNVVSINKCDICDKQFAHKKSLILHIRSHTGENSVLCDVCGKSLSSSEHLRQHLRIHSGYKPHVCAICGKGFAKKSNLTLHERVHTGEKPYVCGSCGKCFSQRSTLVIHERYHSGDRPYTCQLCTKGFVSKGLLSVHIKSCSRLIDLTSDTLLNSSICNDKLAYVADSTSDLIVIDGLEVTVESVLNLEEADVPVNVTQCESTNESTSTPNEISAEKHSDAIIIVIDDNPEDVSTPNQLKEHSYAGNYKSKVEKEKELAEKRVVNNFVSKATQILKTKLNGSEPMKKPFLLVRNINELRDNEIPAVKQKKRAFISEIVPPPSTHLDLPLRVYQGAVKLQEEKESLLTEDNLLVNNMSFITENVCVNDTEVEVDEKITQNEEPVPTTVEIEIEGPENEHNFEDIEMILSDLERKKSLAQSNKEKEVNPTELLEDWNSEDEDVIITTQPQREVEIIEIDCEEDDNRDGVSTNSETIEGSNFSFECRACSHIFKNVKQRNFHELVIHNKTAESDSFIMEFKCLVCYQSFKTWNGVVSHVSKNHPKWEGKVYGCLRCKKGYTSQENHVHELLCQKCGKMCGNSIELNDHQCVENDSEKPSKQTNSSLYSCIYCTAEFDLMIKTKRHVEMKHKNIHKPFYRCNKSGIHFPVAPDEQAIYKQTVEDGVHPNADQNMDDDDDGEIYECIFCEERFTNCDSARNHMKTHGESAAHRRWSYMCVKCCKCFTSYEDTVFHVKWVHGKSKLLSYYCQFCNKKFRIYEAHSHDKAKAIITHAPIHVFNCIFCNTGCKEYGDIITHLESKHANVLEPEYRCHRCCKNYSLEEYHEHDGVVFQRGVHIKRPNKAMRRKLALLQVFTKSSTTVTNYYVTVHCDGCFTLYQNKKDEVKKITSNDVVRAESSCRKCKKRFSDVENRLHSRLFNTSVKEDFDVNIPGTSKQKISSYQNFMCFYCGCQFKNYHRILEHIKVAHKHIAEKNNPIPEETKSCVLCQKIVNKKDLFAHTKSIHPGNFCLICFEVFDKEKIHICSKLSSINMKIACPRCLRVFDFEGNYLHHKKFHEAQDVNDLRWCCFICELAFGSRDLLDRHEKRHNTFQECSVCFKKYKFPSSVEKCKLIHQNFVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -