Mser018891.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004603.1:34025846-34037855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.012 0.83 10.7 6.4 1 23 90 112 90 112 0.97 2 14 0.058 4 8.5 7.3 1 23 118 140 118 140 0.98 3 14 0.00014 0.0099 16.8 0.8 1 23 174 196 174 196 0.99 4 14 0.00078 0.055 14.4 4.4 1 23 230 252 230 252 0.98 5 14 6e-05 0.0042 17.9 1.4 1 23 314 336 314 336 0.99 6 14 0.0016 0.11 13.4 5.1 1 23 342 364 342 364 0.98 7 14 0.2 14 6.8 2.4 1 23 370 392 370 392 0.98 8 14 4.2e-05 0.003 18.4 5.5 2 23 399 420 398 420 0.97 9 14 0.012 0.84 10.7 5.7 1 23 426 448 426 448 0.98 10 14 0.0036 0.25 12.3 3.6 1 23 454 476 454 476 0.98 11 14 0.0014 0.096 13.7 5.4 1 23 482 504 482 504 0.98 12 14 0.00019 0.013 16.3 0.9 1 23 510 533 510 533 0.98 13 14 1.1e-05 0.00078 20.2 1.9 1 23 540 562 540 562 0.99 14 14 0.61 43 5.3 0.4 2 14 731 744 730 749 0.91
Sequence Information
- Coding Sequence
- ATGAAAGTAACAATAAAAGAAGAACCAGTTCAAGATAACAGTACATGGGAGTCCTCTACTGACAACATTTACACTCTCAATGCAACTGTCAAAGAAGAACCTTCATACGATGACCTGTCGGATATTGacTCGATTAAAATTGAAGTAGATTTGGATATAGAAACAATTACAGATAATGTTAAACAAAGAGACAAAAAGAATAAACGTTCGAATAAGTTACGTTTAAAGAAACAAATACAAAATCATCCTCACACAGTTGATTATCCACATAAATGTACTATATGCGActacaaatgtttaaaaagatcaaatttaaCTAGACACATGTACATTCATGGAGAAGAAAAACCCTTTCAATGTACCATATGCGATTATAAATGCTGTAGTAAGCGACGTTTAAATATACATTTTCTAACCCACACTGGAGAAAAGCCACATCGTTGTTCTATGTGTCCCTTCCAAGGTCTGAGCGAAGCAAGTTTAACTAAACACAAGTGTAGCAAAACAGGTCAAAAGCCTTATCAGTGCGCTATGTGCCCATACAAATGTGCGCGTAACAAAGGTTTAGAGATACACAtgttgactcatacagATGTGGATATAGAATCAAGTCCAGATAATGTTAAACAAAGAGGCAAGAAGAATAAACGTTTGAATAAGTCACTTTTAAAGAAAGGTGATTATCGACATAAATGTACTATATGCGGCtatgaatgtttaaaaaaatcaaatttaactaGACACATGTTAATTCATTGTGAAGAAAAACCCTTTCAATGTACCATACGCGATTATAAATGCTTAGATAAGCGACAATTAAATATGCATTTTCTAACCCACACAGGAGAACAGCCACATCATTGTTCTATGTGTCCCTTCAAAGGTCTCAATGAAGCAAGTTTAACTAAACATAAGTGCACCAAAACAAGTCAAAAGCCTTATCAGTGTACCATGTGCCCCTACAAATGTGCGCGTAACAAAGGTTTAGAGATACACAtgttgactcatacaggtgaaaagccataTCAGTGTGCTGTGTGTGACTACAAATGTGCTCATAAAAATAGTTTGAAGAACCACATGTTCTCTCATTCAAGTGAAAAACCGTTTGAATGTACCCAATGCAGCTTTAAAACTTCGCTCAAGCTAAGTTTAAAGTACCATTTACTGACCCACACTGACGAGAAACCATGTCAATGTACTAAGTGCGGCTACAAATGTGCGCGTAAAAGTGATTTAAAGATACACATGTTgacccatacaggtgaaaagccttttcAGTGTGATACATGCTCCTATAGATGTTCAGTTAAGAGTCGTTTAAAGAGACACAAACTTACGCACTCTGGTGTTAAACCATTTCAATGTACTGTGTGTGATCACAAATTTTTGAGTAAATTCACATTACGTACTCACATGTTGATTCATACAGGGCAAAAGCCTTTTCAATGCACCATATGCGATTATAAATGTGCATATCAATCAAAATTATCTAACCATATGTTACATCACACTGGTGAAAAAGCGTATCAATGTCCACTGTGCGAATTCAAAACTTCAGGAAGATTTAATTTAACTAGACACATGATGATCACTCACACATGTGTTTATCCATCTTATAAATGTGATACTTGTGATTACGCTTGTTCAAAACAATCAAGTTTAGAGAGCCACATgatgatccatacagtgagAATCATGTGCTCGCGTACTGATGTTATAATTAATATGGCATTGGAAGCACAATCGTGTAAAGATAGGGAAGATACGACACAAAATACATTTGGTCGACCAGGTCCTTCGAGAGAGCACGATTCGTCAGATCTAGATTCAGATCAAGAACGAGTTGTTGATAATGTGAAAGATTTCTTTGAAGATTCTGACTGTTCAGTAAAAGACAAGGATTACATTCCTGGATCCGAAAGCTCAGAATCTGATGAAGatACTTTCAATTCACAACCACATTGTGATGAAGCAAACAGCGTTGTGCAGTCGGGGTCGAACTCGGAAAATGCAAATTCGTTGACTGTTAAtgaacattttaaagaaaaacagaAGAGGAGGAAATTTCCCAAACCTGAAGACTGGAAGAGGAACACACAGAGGAGACTGAAGCAAACGGGCCAAGCATATACCAGCACTACGGGTAAGCGAATTCAGTCCAAAACACTACAGCCGAAAGATTGCTCACGGTGTCCAAGAAAGTGCAATACAAGTTTCACTAATCAAGACCGTGAAAATATACATGAAAACTACTGGAAAATGGGCAACCCTGAAAAACAGCGTCAGTACATAAGCTCTTTAATAGATGAACATAAAAAGGCGTCAATTAGAACAGCGGCAGGTGATGAATCTCGCAGACAGAAAACTAAAACTTATTACCTGATAAAAGATAATGAAAAAGTGCaggtttgcaaaaaattttttctttctacATTTTCTTTGTCTGGGAAGTTTACGGATGGAGTACTTAAAAACCGGAATGAAAACAATATTGTTCAAATTGATAAACGAGGACATCATGTCCCTGGAGTAAAAATTAGGGATGAAAATAGGGATTTTATTCGGTCTCATATTCGGTCATTTCCTGTAATGCCTGCTCATTATTGTAGAAAGGACTCGAGCAAAGAGTATTTGGAAAAAGACCTTAACATACAGAAAATGTATGACttgtatttacaaaaatgcaaaGAGGAAAAAGTGAAACCAGAAAAGCAATGGCTTTATCGCGATATatttacaaaagaatttaatttagcCTTCTATACACCTAAAAAAGACATTTGtgacttttgttttaaatatgaaCGCATGTCTGCGGATGAAAAGGTGCTGAATAAAACTGAATATGAAAATCATATCAGACGCAAAGATGCAGCCAGGAAGTTAAAGAATGATATAAAAGAAAAAGCATTAAACGGAGAATGCCACCTAGCCGAATTCGACTTACAAGCTGTACTTTACTGTCCCAAAAGTTTAGCAAAAGCTTTGTTTTACCGAAACAAATTAGCTGTTTACAATTTTACCATACTAAgcctagagaaaaaaattgcgtATTGCTATATGTGGCACGAGGGAATAGGTGCCCGAGGCTCAATCGAAACAGCTTCCTGTGTCTTtgattttcttggaaaaattgCTAGCGgaaaaacagtaaattttttttctgatacTTGTGGTGGTCAGAACAGAAATGTAAATATGACTGCAATGTTTCTATATGCTGTACAAACATTAGATGTTCCCCAAATCAATCAGATGTTTTTTGAATCTGGGCACTCCCAGATGGAGTGCGATAGTGTACACgcacaaattgaaaaaaaaagtaaaaatttggaGGTATACGATCCATCTGGTTGGTACACTGCAGTACGAATGGCAAGTCCTAGACGAACTCCAAAATCTGATAAGAAAACTATTTATGAGCCGTTAGTTGTAAaggaaaaaaaactaaaagattTGTTAGAGTTGTGTACCATGGGTATTATTAGAGAACCATATCACGCGTTTTATAAATCATTATCTTCAGAACCTGAGAGTGGAACAAGAGATTCGTCAGATGATGAagcataa
- Protein Sequence
- MKVTIKEEPVQDNSTWESSTDNIYTLNATVKEEPSYDDLSDIDSIKIEVDLDIETITDNVKQRDKKNKRSNKLRLKKQIQNHPHTVDYPHKCTICDYKCLKRSNLTRHMYIHGEEKPFQCTICDYKCCSKRRLNIHFLTHTGEKPHRCSMCPFQGLSEASLTKHKCSKTGQKPYQCAMCPYKCARNKGLEIHMLTHTDVDIESSPDNVKQRGKKNKRLNKSLLKKGDYRHKCTICGYECLKKSNLTRHMLIHCEEKPFQCTIRDYKCLDKRQLNMHFLTHTGEQPHHCSMCPFKGLNEASLTKHKCTKTSQKPYQCTMCPYKCARNKGLEIHMLTHTGEKPYQCAVCDYKCAHKNSLKNHMFSHSSEKPFECTQCSFKTSLKLSLKYHLLTHTDEKPCQCTKCGYKCARKSDLKIHMLTHTGEKPFQCDTCSYRCSVKSRLKRHKLTHSGVKPFQCTVCDHKFLSKFTLRTHMLIHTGQKPFQCTICDYKCAYQSKLSNHMLHHTGEKAYQCPLCEFKTSGRFNLTRHMMITHTCVYPSYKCDTCDYACSKQSSLESHMMIHTVRIMCSRTDVIINMALEAQSCKDREDTTQNTFGRPGPSREHDSSDLDSDQERVVDNVKDFFEDSDCSVKDKDYIPGSESSESDEDTFNSQPHCDEANSVVQSGSNSENANSLTVNEHFKEKQKRRKFPKPEDWKRNTQRRLKQTGQAYTSTTGKRIQSKTLQPKDCSRCPRKCNTSFTNQDRENIHENYWKMGNPEKQRQYISSLIDEHKKASIRTAAGDESRRQKTKTYYLIKDNEKVQVCKKFFLSTFSLSGKFTDGVLKNRNENNIVQIDKRGHHVPGVKIRDENRDFIRSHIRSFPVMPAHYCRKDSSKEYLEKDLNIQKMYDLYLQKCKEEKVKPEKQWLYRDIFTKEFNLAFYTPKKDICDFCFKYERMSADEKVLNKTEYENHIRRKDAARKLKNDIKEKALNGECHLAEFDLQAVLYCPKSLAKALFYRNKLAVYNFTILSLEKKIAYCYMWHEGIGARGSIETASCVFDFLGKIASGKTVNFFSDTCGGQNRNVNMTAMFLYAVQTLDVPQINQMFFESGHSQMECDSVHAQIEKKSKNLEVYDPSGWYTAVRMASPRRTPKSDKKTIYEPLVVKEKKLKDLLELCTMGIIREPYHAFYKSLSSEPESGTRDSSDDEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -