Mser000400.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004600.1:5986535-5993448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.015 16.2 0.2 3 23 340 361 338 361 0.93 2 11 0.0094 0.66 11.0 0.0 1 23 367 389 367 389 0.95 3 11 2.6e-05 0.0018 19.1 3.0 1 23 436 459 436 459 0.98 4 11 4.8e-05 0.0033 18.3 1.1 2 23 473 494 472 494 0.97 5 11 9.8e-05 0.0068 17.3 2.9 2 23 664 686 663 686 0.96 6 11 0.0091 0.63 11.1 6.5 1 23 692 714 692 714 0.98 7 11 0.028 1.9 9.5 0.2 2 23 719 741 718 741 0.91 8 11 0.00024 0.017 16.0 1.2 2 23 748 769 747 769 0.97 9 11 9.3e-05 0.0065 17.3 1.5 1 23 775 797 775 797 0.95 10 11 0.033 2.3 9.3 3.8 1 21 801 821 801 823 0.94 11 11 0.013 0.91 10.6 6.7 1 23 833 856 833 856 0.96
Sequence Information
- Coding Sequence
- atgtattacgTCGTGGATATATGTCGAGTTTGCCTTAATTCTGATGGCCCACTTTTAGATGTAACAAATAAAGATTGCAATGAAAAAGAGACttggataaaaaaattaacatcttgCATTTCTGAAGTGGAGTGGAATGTGgaagataaaatttttctatgtaAAGCTTGTATCGACAAATTGAACTCTGCTTTTGACTTTAGATGTTTATGTTTACAATCGaaccaaacttttaaaaagtacgTAAATAAACTAACACAATGTGATGATAACCAATTAAAAACATTAACGAGGTTAACTGTGAGTTTGGAACTCGATCAAGTTAATAAAAAGCATTTGGACGAGTTCCTTAAAAATGAGCAAGAAATTGAAGCTTCTAAAGCAAATCTTCAAATTAAAGCGAATAGAGAACTCTTTCCCTTAGGAACTCCAAACGTCATCTTAAACAACAaccaaaatcaattttttttaagtttaattccTACAAATAAATTAGTCGTTAGTCCTACAACTGGTGATTCGAAACAAGCTTCGCCAACGAAAGATGTTAATCCAAATAACGTATTTTTGCATATTAACAATACGCTTTTGAAAGTTTTACCGCTTAATACTGTTCCAAATGTCGATACAATAAAGTCTGGCGCTATTAATAATTTACTGGCAAAACCAAAATTAAATGTTGAAGAGACGAAAAGTGAGGAATTGAGTGTCGAAGTGGATCCTAGTATGTTTGAGTGTTCAGAATATGAACCACAAACTGAAGAGGAAGATGCAAATAAAGATTGGGAAGACGTGATTACCAGCAATAAAATTGCGCCCGACATAACTAACAACCCACCTCCTTTAGTTAAAATATTAGGATTAACACAATCaccagaaaaattaaaaattgcaccTACTAAAAATTATGTGCCAATACTACCAAAGCCTAAAActgcaaattttacaaatagaATGGACTATTTAAATGTCGATCACTTTATGGCTCCTAATAGAAACTCGGAACAATTAATAATATGTGAGTTGTGTGGAAAAGTGTTTAATACGTCCGTTCTTTATAGAACTCATTTAAGTCAATCTCATAAGGAAGAATTTCCTTTTACATGCAAAGTGTGTCCCGCTGCATTTGCCGAATCGGCCGACTACGAAGCCCACACCGACGAGCATAAAAATCAAATGAATCTCTTTGAAAAAGATACTTTAACTTTAGATGACTTATCGTCACAAAATGAAAATCTCCTTTTTCCAATATTATCGAATATTTTACACAATGAAGCAGAACCTAAACAAAACGTTGTGACTGAATTTAAATGTACTATATGCACTAAGAAATTTCCTAACGCTACTTATTTATCTCAACATAAACGTACAAAGCACGGCATGaagaaatatttcattaaagGTATGAAAAATGGAAAATGCGATATTTGCAATCGAGAGTTTTCAACTCAGTCGTATATGCAATTGCATAGGAAGTTACACTTTAGGGTCGACGATAAACGAGGTAAAGTGCCTCATAGATCTAGGTACGTTCAAAAAAGTGCAGACCAATCTGAAGAACCATCTGGAATTGATAGTATTATAGAAGCAGAACCGACGATATTGGAAGATGTCAAAATGCAAGTAGAAGAAAATTTGACACAAATTGAGCCCGAAGTGGAAGATGCATTAGAAGGAGAAATTAAACCAGTAGAAAATAGTGAAGAAAATGGTCTAAAAATTaagatcaatttaaaaaatatatctcaATCTCAAGATAAGACTGAAGAGGAAAAGGAGTTAAATGAtgatgaaaaaacaaatttagtgTTTGAAAATGTAACTAGTGATTTACTATGTGATCCTTACGATTCTCCAGAGGATAGCATGGATTGtgataaaaatgaagaaattttgaCGGAAGAAAGGGAGCTCCTTAAAGATGACGAGTCGCTTGACGAGCGACGTGCTTCCGTTAACTATACGACAGTAACCGTAAATGGAAAATCGCAGTGcaatgtttgtttaaaattattcagcAGGAGGCACGATTTAAAGAGACATATGAACAACATACATCTAAAAGCCATACAATACATATGCCATTTGTGCAATAGCCACTTCTACGAAGCTTTTCATTTAACGAGACATTTGCGCATTCACGTGGGTTTTGTAAGATGTACGCTATGTTTGAAAGATTTTAGTACTGTGAGGGATTTGAAATTGCACGTTATTGGAACCCATCAAAATAGTGCTACTGTACAGTGCGGGGTGTGCGgaaattcgtttaaaaaaataaaacatttacgCGACCACATGCAAGAACACGAGAAATCTATATTGTATAAGTGTCACATTTGTAGCGAAAATTTTAGAGAATCGAGAGAATTAACGAGACATTTAGTCGGCCATAGTGGATTATATTCTTGTTACATTTGTCAAACAAATTTTGCTAACGAACACGAATTAAATGTTCATACAAAATGTCATTCGGACGATATGATTAACGAGAAGAAGCACGAATGTAAAATTTGTCATAATAGGTATAAGAAAAAAAGATATCTCACTTTACATATTAGAAATAcacataataataaaattgaaaccgAATGCGATACATCGTAA
- Protein Sequence
- MYYVVDICRVCLNSDGPLLDVTNKDCNEKETWIKKLTSCISEVEWNVEDKIFLCKACIDKLNSAFDFRCLCLQSNQTFKKYVNKLTQCDDNQLKTLTRLTVSLELDQVNKKHLDEFLKNEQEIEASKANLQIKANRELFPLGTPNVILNNNQNQFFLSLIPTNKLVVSPTTGDSKQASPTKDVNPNNVFLHINNTLLKVLPLNTVPNVDTIKSGAINNLLAKPKLNVEETKSEELSVEVDPSMFECSEYEPQTEEEDANKDWEDVITSNKIAPDITNNPPPLVKILGLTQSPEKLKIAPTKNYVPILPKPKTANFTNRMDYLNVDHFMAPNRNSEQLIICELCGKVFNTSVLYRTHLSQSHKEEFPFTCKVCPAAFAESADYEAHTDEHKNQMNLFEKDTLTLDDLSSQNENLLFPILSNILHNEAEPKQNVVTEFKCTICTKKFPNATYLSQHKRTKHGMKKYFIKGMKNGKCDICNREFSTQSYMQLHRKLHFRVDDKRGKVPHRSRYVQKSADQSEEPSGIDSIIEAEPTILEDVKMQVEENLTQIEPEVEDALEGEIKPVENSEENGLKIKINLKNISQSQDKTEEEKELNDDEKTNLVFENVTSDLLCDPYDSPEDSMDCDKNEEILTEERELLKDDESLDERRASVNYTTVTVNGKSQCNVCLKLFSRRHDLKRHMNNIHLKAIQYICHLCNSHFYEAFHLTRHLRIHVGFVRCTLCLKDFSTVRDLKLHVIGTHQNSATVQCGVCGNSFKKIKHLRDHMQEHEKSILYKCHICSENFRESRELTRHLVGHSGLYSCYICQTNFANEHELNVHTKCHSDDMINEKKHECKICHNRYKKKRYLTLHIRNTHNNKIETECDTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -