Mser001639.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- pita
- Assembly
- GCA_963924605.1
- Location
- OZ004600.1:24023121-24024698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0005 0.035 15.0 3.7 2 23 115 137 114 137 0.95 2 11 3.1 2.2e+02 3.1 4.9 1 23 142 165 142 165 0.92 3 11 1.3e-05 0.0009 20.0 3.3 1 23 173 195 173 195 0.98 4 11 0.0014 0.096 13.7 0.6 1 23 201 223 201 223 0.98 5 11 1.5e-07 1e-05 26.1 4.3 1 23 229 252 229 252 0.98 6 11 0.014 0.98 10.5 3.6 1 23 258 280 258 280 0.98 7 11 2.8e-05 0.002 19.0 0.6 1 23 286 308 286 308 0.95 8 11 1.1e-06 7.5e-05 23.4 0.9 2 23 334 355 333 355 0.97 9 11 0.00063 0.044 14.7 6.1 1 23 361 383 361 383 0.98 10 11 8e-08 5.6e-06 27.0 2.0 1 23 389 411 389 411 0.98 11 11 9e-05 0.0063 17.4 6.4 1 23 417 439 417 439 0.96
Sequence Information
- Coding Sequence
- ATGCAAATAGATACAATTTGTAGAGTATGTTGTCAAAAggaaaatctaattaaaatatttgaaaatgatTTGTCGAAAAAGATCATGATAATATGTGCTTCTGTACAaATTGAAGAAAACGATGGACTACCTCaacatatttgtaaaaattgcaaaaatgacttagatattagtttaaaatttaaaaacttatgtGAGAAATCAGATCAACTATTTCGACAAGTAGAAGATATCAATATAAAGAGTGAacctttattttataaaagcggcTTAAAGTTAGACCAAAGTACAATTCAAATAGATAGAGTAGCTGAAGTAAAGACTGAAATAAACAAAGCATTAACTTGTAATAAGTGTTCGAGATGTTTTCAAACTAAACGTTCTTTATCCGTCCATATTAGTAAAGCACATGGAACTAAATCATACACATGCAATCTTTGTTGTTCACGATTTTCATCAAAATATACATTGGTTCTTCATTCATACAAAAATCACAATGTAAGAGTTAAAAATCAACATCAGTGCCATATATGCGGGCGCTTATTCAAATATTCAGGAGAACTGAGAAATCATTTGTTGTCACATAACGGCATCAAGCCGTATAAATGTACCATTTGTGAAGCAAAATTTCTTACTAAACAAGCACTAACTAAACATGTAGCCAAACATGATGGTGTAAAAAAATATGAGTGTTGTTATTGCCCGAAAAGCTTTAATCATCCCAGTAATTTACAAGTGCACATGAAGAAGCTTCATCAAGAACAAGAGAGGTACTCTTGCTTAACATGTCACAAAGAATTAAAATCGCGACGCACTTTacttttacattataaaattcATGCAAACGAtcgtaattttttatgcaatcaATGCGAAAAGGCGTTCATTAATAAATACGATTTGGGTAGACATTTAAAATTGCacgaaaagaaaaaattaatagaaactgGTACTTATGATTCAACACAAGATGATAATAATAGAATTAAGAATATACTTCAATGTGAGCATTGTGGAAAAATTTTGACTAGTTCTGGAGATTTGAAGAAACACTTACGTGTTCATTCTGGCGAAAGACCTTTTAGTTGTACGGAATGTAGGAAAACATTTAAAAGTTCTAGTTCTCTTCGTTGCCATGAAAAAACACATTTAAAGAGTCAACCCTACGTTTGTAATCACTGTGGTCGTGGATTTTCTCAATCTTCAAATTTACGTACACACGAGAGACTACACACTGGTTTTAGACCTCACAATTGCTGTATATGTACTAAGTCATTTAATAGGAAACGCGATTTAAATAATCACATACTTAAACACGAAGCAAAAGTAGAGTAA
- Protein Sequence
- MQIDTICRVCCQKENLIKIFENDLSKKIMIICASVQIEENDGLPQHICKNCKNDLDISLKFKNLCEKSDQLFRQVEDINIKSEPLFYKSGLKLDQSTIQIDRVAEVKTEINKALTCNKCSRCFQTKRSLSVHISKAHGTKSYTCNLCCSRFSSKYTLVLHSYKNHNVRVKNQHQCHICGRLFKYSGELRNHLLSHNGIKPYKCTICEAKFLTKQALTKHVAKHDGVKKYECCYCPKSFNHPSNLQVHMKKLHQEQERYSCLTCHKELKSRRTLLLHYKIHANDRNFLCNQCEKAFINKYDLGRHLKLHEKKKLIETGTYDSTQDDNNRIKNILQCEHCGKILTSSGDLKKHLRVHSGERPFSCTECRKTFKSSSSLRCHEKTHLKSQPYVCNHCGRGFSQSSNLRTHERLHTGFRPHNCCICTKSFNRKRDLNNHILKHEAKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00950134;
- 90% Identity
- -
- 80% Identity
- -