Mser013404.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:9742811-9750383[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 78 4.5 3.5 1 19 310 328 310 333 0.89 2 15 0.0018 0.13 13.3 3.7 1 23 339 361 339 361 0.98 3 15 0.011 0.75 10.9 0.9 2 23 368 390 367 390 0.95 4 15 0.00022 0.016 16.1 4.3 1 23 395 417 395 417 0.98 5 15 3e-05 0.0021 18.9 3.1 1 23 426 448 426 448 0.99 6 15 2.9e-06 0.0002 22.1 0.8 1 23 453 475 453 475 0.97 7 15 2.2e-06 0.00015 22.5 2.2 1 23 481 503 481 503 0.98 8 15 1.6e-08 1.1e-06 29.2 2.2 1 23 509 531 509 531 0.99 9 15 5.7e-05 0.004 18.0 3.4 1 23 537 559 537 559 0.99 10 15 0.0026 0.18 12.8 0.1 2 20 592 610 591 612 0.93 11 15 0.0055 0.39 11.8 2.4 1 23 618 640 618 640 0.97 12 15 0.0022 0.15 13.0 1.0 1 23 671 693 671 693 0.95 13 15 0.013 0.88 10.6 0.8 1 21 730 750 730 751 0.94 14 15 1.6 1.1e+02 4.0 2.2 2 23 758 780 757 780 0.94 15 15 0.00074 0.052 14.5 5.9 1 23 794 816 794 816 0.97
Sequence Information
- Coding Sequence
- ATGGCTAGTGAAAATGAAATTATGCAATTATGCCGTTTGTGTTTAGTTAAAGAGCAAGTGAATGTACCAATATTTGACGAACAAAGTGATATAagacaaattttcttaaaaatatcaGCTTGCCTACCGGTCAAAgTCTCTAGAGAAGACAACTTACCAAAAAAAATATGTGACGATTGTTCCTATAAATTAGAAGTTGTCTATCAATTTTGGAATACATCAGCAACCtcagaaaaacaattattaaaatggtTAAATCAACTAGGTGCAGTTAGTAGAACATCGGATAAAACCTCAAATTCACATTCCTTATCCAGCGAGCCCCTTGTAAACTTAAAACAAGAAGTAGTCGAACTTAACGATACTCAAGATCATGATAACTTAACTTCTGAAGACTTAGATCAATCTAACGAAAGTTACATTTTACAACAGCAGCAGCATTCATACCAACAAGTTGAGTTTCCGTTTCAAGATGGATTTGGGGATGATGATacGGCCGCCGGTTCATCAGCAGTTATTAGTGAGACTGTTGGTGGTAGACCAAAACGTAAGCGGCGTGCTGCTGCCATGAAAGCGCTTCCTCCTCAATTAGATAGTGATGATGAGGATGATATGCTAGCAGGGAAAATTGCTAAGACTGAAGAACAAAGTGATGATAGTGGTGAAGATCCTGAACCAACAACTTTTGTTGGTTTACCTTCAACTAGTACTGATGATCAACCCGGACCTTCCGGTATTGGCAAGGGGAACTCAGAAGCACCATTCAAGAAATCATTAGAAAATACAGCTGTAAATGGGAATCAACAATCGAAAAAAAAGAAACCAGGCGCCCAAAAGAACGCTTTGATCAAAAATCCAAAACTTAAGATTAGTAAAAACTCTTCAAAAAACTTCtcaaaaaacgaaaatgtcCAAGatgagaaaatttttgaatgttGGAAATGCGATGAAAAATTTGAGCATTTGTTTGAAGTTAAAATGCATTGCGAATCGACTCATAAAAGTGATAGAACTTTCGAGTGCCAAATTTGTGATAAAATATTccataaaaaacaattatttcaaTACCACCAAGCacgtcattttaaaaattataaaattaaatgtgatcAATGCGAAAAGGGTTTTTATACAATGTTAGATTACAAAAGACACTACTCGGTTCGCCATAAGGGTGTGAGATTTGTTTGCGATCACTGTACTAAGTCAttcttagatcaaaataattataaaagacaCGTTAAAACTCATCAAAGTGGTTATGTTAAAGAAGAGTACAAATGCAAGAGCTGCGATAAAGTTTATCATACGAAGGGTAGCTTAAATGTTCATTTGAAGAtgcataaaaatatttcttacatTTGCGACATATGTGGAAAGTCGGTGACGTCAAAAACTAGTTTAAATCATCACATTATGTTACATACTGGCGAAAAGCCGTTTGTTTGCGAAATTTGTGGaaagtgttttaataaaaaaatgttactgAAAATTCATACTAGAATACATACTAATGTAAAACCTTACACTTGTACGATATGTGATAAAACTTTTAGTCAAAGGAGTACACTGACTGTTCATATGCGTTATCATACGGGAGATAAACCTTTTAAATGCAATATTTGTCAAAAACAGTTTGTTACTAAAACTTTCCTTAAAGTACACTCAAAAACTCATGGAACTGCTTTAATCGATgtATTTACGGATCCTCTAAAGTTAATTGTAAAGCCAATACGCCTGTATGACGACGCCACCATTCAAAATGGTATATGGGTGTGTACAGTTTGCAGCCAATCTTTTGCCAGCAATATGGATTTGAAAGATCACATTTTTAGTCAAGTTTTGGACGTATACATTTGTTGCAAATGTGGAAGTAAATTTGCGGATGAAAAGACTTTTAGATTACACATACGTGATCATAAAAAGCAACTTATAAATTTCACCCTTAAACCATCAAATAGTATAATGACTTCTTCGGGCAAATTAATCGATCATAGGGTTAATAATATGTTTATATGTAAATATTGTGACGCAACGTTTAAAGATAGAATAGGATTTTACAATCATTATGTTAGTCATACGTTTATTAGTAAACCAGCAACTACCCCTCAACAagaaattaatatatatttttccgACAAAAAGAATTTACCTACTCATTTAGAACGATTTTATAACTCTGTTAAATTTAGATGCCCAAATTGCCAAGAAGGTTTTTGTACTACAAGTGCAAACGTCAAACACTTACTGAATTGTTCCGGCAGGAAGAAATATTGCGATTTGTGTTCCATGAAATACgatactaatttaaaattgtatgcCCACTATCAACATAATCATGTGGGGTTGAGGGAAATGTGTGCCCATTTACAGTATTCTCATTATTGTTGTGATTGTAGTAAGGCGTTTTCTTCTGCTACAAAATATAATCAACACATTAAAACCCATTCTTAA
- Protein Sequence
- MASENEIMQLCRLCLVKEQVNVPIFDEQSDIRQIFLKISACLPVKVSREDNLPKKICDDCSYKLEVVYQFWNTSATSEKQLLKWLNQLGAVSRTSDKTSNSHSLSSEPLVNLKQEVVELNDTQDHDNLTSEDLDQSNESYILQQQQHSYQQVEFPFQDGFGDDDTAAGSSAVISETVGGRPKRKRRAAAMKALPPQLDSDDEDDMLAGKIAKTEEQSDDSGEDPEPTTFVGLPSTSTDDQPGPSGIGKGNSEAPFKKSLENTAVNGNQQSKKKKPGAQKNALIKNPKLKISKNSSKNFSKNENVQDEKIFECWKCDEKFEHLFEVKMHCESTHKSDRTFECQICDKIFHKKQLFQYHQARHFKNYKIKCDQCEKGFYTMLDYKRHYSVRHKGVRFVCDHCTKSFLDQNNYKRHVKTHQSGYVKEEYKCKSCDKVYHTKGSLNVHLKMHKNISYICDICGKSVTSKTSLNHHIMLHTGEKPFVCEICGKCFNKKMLLKIHTRIHTNVKPYTCTICDKTFSQRSTLTVHMRYHTGDKPFKCNICQKQFVTKTFLKVHSKTHGTALIDVFTDPLKLIVKPIRLYDDATIQNGIWVCTVCSQSFASNMDLKDHIFSQVLDVYICCKCGSKFADEKTFRLHIRDHKKQLINFTLKPSNSIMTSSGKLIDHRVNNMFICKYCDATFKDRIGFYNHYVSHTFISKPATTPQQEINIYFSDKKNLPTHLERFYNSVKFRCPNCQEGFCTTSANVKHLLNCSGRKKYCDLCSMKYDTNLKLYAHYQHNHVGLREMCAHLQYSHYCCDCSKAFSSATKYNQHIKTHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -