Mser013950.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:16955516-16971977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3e-05 0.00091 20.0 0.4 2 23 219 241 219 241 0.96 2 19 0.86 60 4.9 4.3 1 21 350 370 350 371 0.94 3 19 0.36 25 6.0 0.2 5 21 436 452 434 453 0.92 4 19 0.00011 0.0076 17.1 0.7 2 23 560 582 559 582 0.95 5 19 0.019 1.3 10.1 0.8 3 23 591 612 591 612 0.97 6 19 0.2 14 6.9 0.0 1 23 631 653 631 653 0.96 7 19 0.00013 0.0092 16.9 0.5 2 23 657 678 656 678 0.97 8 19 0.00017 0.012 16.5 1.0 2 23 703 724 702 724 0.93 9 19 0.14 9.8 7.3 3.6 2 23 784 805 783 805 0.97 10 19 4.5e-06 0.00032 21.5 6.4 1 23 841 863 841 863 0.98 11 19 0.51 36 5.6 0.9 3 23 885 905 883 905 0.97 12 19 7.1e-05 0.005 17.7 3.9 1 23 929 951 929 952 0.95 13 19 0.0034 0.24 12.4 0.1 2 23 964 986 963 986 0.96 14 19 6.7e-05 0.0047 17.8 0.1 1 23 1003 1025 1003 1025 0.95 15 19 0.0049 0.34 11.9 0.1 1 23 1056 1079 1056 1079 0.93 16 19 0.027 1.9 9.6 1.7 2 23 1090 1111 1089 1111 0.97 17 19 8.9e-05 0.0062 17.4 2.1 1 23 1123 1145 1123 1146 0.95 18 19 5.9e-06 0.00042 21.1 0.4 1 23 1154 1176 1154 1176 0.98 19 19 0.0075 0.53 11.3 0.0 1 23 1196 1219 1196 1219 0.95
Sequence Information
- Coding Sequence
- ATGGGTGAACGCAGATTGGGTAATTTTAATTCGTGTTGTCGTTTGTGCTTGTCGGAGAAATTGGGCACGTTAAAGTCCATCTTTGAAGATGATTCGAAAGGTCAGGATATGGCTAGGAATATTAAGCATTTTCTTGGAGTTCAGatTTCCCACAACGACAAGTTGACTACGATGATTTGTGAAAATTGTTTCGGTCAAATACACGATTGgaaactttttaagaaaaattgtgacgaaaatcaaacaaaattattaggCTGGATGAACTCTTGGAATGACAGTAATATTGGAAATATAtcAATACGTATAAAAGATGAAATTGTCGAAGATGTCGACGATAGGCCAATTATAGTAGAAGATGATGATGTTGTACATGTAAAAACTGAACAAGAAGAAAATGTACGTGTACGAGAAAATTCTTACGGTGGTGAACCTATGGAGGAAGACATGTACGATTTACCACCACCGTTAACACCTCACATGCCTGGTGATCCAGCTTTACATGGAGATGATGAAAACGGACAAACAGTAGACGTCTATTCAGATGATGACGACGACGATGAAAACATGAGTATGCTCGTTCCATGTATAGAATTTTCGGAAGGAAGAGAagtattaaTGAATGGTAATTCAACTGACGATGTAAACGATCGTGAGTGCACTATTTGTGGTAAAGAGTTTAGTACGCCAGCAAATCGTAAAAAACACGAACGAATGATCCATTTGAAAAGAACTAAAAGAAATGAATATGgtaCATCAAATATACAAGATACAGATTATAATCGAGGGGAAACATCACCGAGCGAACTAATCGAATTAGAAAAAATACAATTTGCAGCGGGCTTGCGTTTACAACAACGTTCTTTAAACCAACAAGTAACTATCGAAAGTGCTACTCTTAGCGAAGTCGAAGTTGCTTATTTAGATAAATGCAAGACAATAGTTCGTATGAGCGAAACATTGACTTGCGCTTGTCACGGTGAATCTTTTTCCGAATTTAAAGATCTTTTTGTGCATTTGAAAAAGCAACGTACTTGGTTTTCAGTATTTACTTGTTATAATTGTTTGATAACATTTGGCGATAGATCTTCGTATATGAAACATTATTGCCATTGTCCTAAAGCCGATATACAAAATCTCAAACGTTTAACTGAAGGGCCCGTGAATCCTGAAATTAAAATTcgtatttatcaaaattttaaatgcacaaAGTGCAACTGTACTTTTGGTTTTCACGAAGACTTTTGCAGTCACTTCGATGTCAAGCACATGGAGTTGTTAGAAAGCGATCCTCCTTTTACTTGTATTTGTTCTAAATCGTTTGCCGATATCGACGATTATAAGCAGCATTTACACATTGCTTGCTTTTTGCGCCATTTTTGTGATATTTGCTTCGACGAGTTTTCTAGTGTTGACGAGTTTCGATTGCATTGTTACAAAATACACGATAAAGCCGACGGTAGTACTGTAGAATTGTACGATACTTACAACAAGTGTAAACTCGATTCAAACGGTGAAGATTTACCATCTACATCGAGGTATTCTTTACCcaattttgcatttaaaacaGAACCTAATACTGAGAGAAGGCAAACGATTAATGTGGGTGGTCTCGATACTCGTCACATTATTAATTCAACAGTTGTAAGAAATATTACAAAATCGTCGGAACCATTAAATTGCCCACTTTGCGGTAAGCCTTATTCGTCATATCACAATATGTTAAGACATTACAAAATAGCACACGATAAAAGTGGTAAAATACTCGGCTGTGATTATTGTCCTGAAAGATTTAGACTGATATCGGAGTTAAGGGAACACGAGATAACTTGTCATGCCCAAGAGACCGCAAATGCAGACGATCCGTCAAAACCTAACGATCCGTTTAACTTCTCGTGTCCCGATTGTGGCGACTTGTTTCAAACTGTCGAAGAATGGACAGAACATGCACAAACTCATCCCGCAAAAACGTGCGAGGAGTGTGGTAAAGAATTTAAGTTACAAAGCGAACTCGATCAACATCGCAGTGTGCATTTGAATATTAAAGTTTATCGCGATTCGGAAACGCAGGATTATAGAAGTGCCATGATGAGTTCTTCGCCtttaaattgtacaatttgCAATAAGACTTTCGAATCGAAAATAGAATTAAAGAAACATAATTTGTTGCATAAGAAAATGCCTGTTTTAAGTGCTCACGATGATAATAATGATGGTGATAAAAAGGAAGTTGTTACGAAGAAGTATAGTTGTATACAATGTAATAAACATTATATTAGTTACGGTGGTATTTGGGATCATAATAAGAAGTATCATGGTGGTAAATCGGTTGAAAATGATTATCCGAAAAAGTGCCATCATTGCGATAAGCTGTTGAATTCTAAAGGTGCTTGGGTTAATCATAAAAGATGGCACGATCGCCAAAGTCCATCACAATCACAATCACAAATTAACGTAACGCCTTTATCTGTTACCACACGTCGAGCTAGTAGACCCGCAGACGACGACGACGAGTCGTATCACACATGTAAGCGGTGCTTCAAAGTATTTTCCAGTAAATACAACTTGAGAAATCACATGAGAAGTCACGGAATTAATTTAGCTCCAAATAGAAGTAGTACTAAAACTGgtaaagttaataaaactttttggtGCGATGTTTGCCATCAAGCTTGCCCTGGCTACGCCGAATTACAAGAACACAAAAAAGAACACATAGctaaaaaatcgtcaaaagcAACCCAACAAGCTCTAATAAACGACTTACAAAAGAAAGGAACCGAGTTCCCTTGCAATTATTGCAATCTCACTTATACGAAAAACTTCAACCTCTTAAGACACATGGATAAACATCATCCGACACACGTCGACACAAAACCACCagcaatttattgtaaatattgcAAAGTACCGTTTGAAGAGGTAGGCGACTTAAACGACCACATGCAAACCGAACACGAAGAATTGTACAACAAACCGAAAGAAGAAAAACCAGCGGTTAGAAAATTCCCTTGTAAAATATGCAAGAAAGTTTTCGACAATTCTGCTGCTCTTGCTTCACATCAAGGTTGGCACAAAAGAGGTAAATTTggcaagaaaattttaaatcaaaaatcgaTGTTACATCAAATGCCCAACTCGTCGACTATAATTGAACAACATAGCTTCGCTTGTCGTAGTTGCCCCAGAAAGTTCGTTAACGAAACCGCCTTACAAATACATATTTTAGAAACACATAGAAACATTAACACGACAATATTATCAATGAAATGTAATAGTTGTAAGTTAACATTTGATTCTAAAGTCAAATATGACAACCACATGCAATTACACGAAGTCGTCGAAAGTCAGAGACATCCAAAAGCACATCCGTGTAATTATTGTTCTGCCGGATTTAGTAGAAGCGATACGCTAAATGCCCACGTAAGACAACATCACAAGGAATTTTATAACGACATATTTAGATGTAACGAATGCGATCGAGTGTTCGATAAACAAAATGCCCTTACGATACATCTTAAAGTACATGAAAAACAACGTTCGTCTGGTGaagttacaataaaaaatgcGAACAATAAAAGTATGTATTTTTGTTCGATTTGTGATTTAGGTTTTGTAATCGCTAAGGATTTACGTAATCATGTTGTTACTGCTCATccgttttaa
- Protein Sequence
- MGERRLGNFNSCCRLCLSEKLGTLKSIFEDDSKGQDMARNIKHFLGVQISHNDKLTTMICENCFGQIHDWKLFKKNCDENQTKLLGWMNSWNDSNIGNISIRIKDEIVEDVDDRPIIVEDDDVVHVKTEQEENVRVRENSYGGEPMEEDMYDLPPPLTPHMPGDPALHGDDENGQTVDVYSDDDDDDENMSMLVPCIEFSEGREVLMNGNSTDDVNDRECTICGKEFSTPANRKKHERMIHLKRTKRNEYGTSNIQDTDYNRGETSPSELIELEKIQFAAGLRLQQRSLNQQVTIESATLSEVEVAYLDKCKTIVRMSETLTCACHGESFSEFKDLFVHLKKQRTWFSVFTCYNCLITFGDRSSYMKHYCHCPKADIQNLKRLTEGPVNPEIKIRIYQNFKCTKCNCTFGFHEDFCSHFDVKHMELLESDPPFTCICSKSFADIDDYKQHLHIACFLRHFCDICFDEFSSVDEFRLHCYKIHDKADGSTVELYDTYNKCKLDSNGEDLPSTSRYSLPNFAFKTEPNTERRQTINVGGLDTRHIINSTVVRNITKSSEPLNCPLCGKPYSSYHNMLRHYKIAHDKSGKILGCDYCPERFRLISELREHEITCHAQETANADDPSKPNDPFNFSCPDCGDLFQTVEEWTEHAQTHPAKTCEECGKEFKLQSELDQHRSVHLNIKVYRDSETQDYRSAMMSSSPLNCTICNKTFESKIELKKHNLLHKKMPVLSAHDDNNDGDKKEVVTKKYSCIQCNKHYISYGGIWDHNKKYHGGKSVENDYPKKCHHCDKLLNSKGAWVNHKRWHDRQSPSQSQSQINVTPLSVTTRRASRPADDDDESYHTCKRCFKVFSSKYNLRNHMRSHGINLAPNRSSTKTGKVNKTFWCDVCHQACPGYAELQEHKKEHIAKKSSKATQQALINDLQKKGTEFPCNYCNLTYTKNFNLLRHMDKHHPTHVDTKPPAIYCKYCKVPFEEVGDLNDHMQTEHEELYNKPKEEKPAVRKFPCKICKKVFDNSAALASHQGWHKRGKFGKKILNQKSMLHQMPNSSTIIEQHSFACRSCPRKFVNETALQIHILETHRNINTTILSMKCNSCKLTFDSKVKYDNHMQLHEVVESQRHPKAHPCNYCSAGFSRSDTLNAHVRQHHKEFYNDIFRCNECDRVFDKQNALTIHLKVHEKQRSSGEVTIKNANNKSMYFCSICDLGFVIAKDLRNHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -