Mser021075.2
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004604.1:22189671-22191960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 0.74 10.9 0.4 1 23 103 125 103 125 0.98 2 18 0.091 6.4 7.9 0.1 1 23 131 154 131 154 0.92 3 18 0.00087 0.061 14.3 1.6 1 23 238 261 238 261 0.98 4 18 2.6e-05 0.0018 19.1 1.1 1 23 265 287 265 287 0.99 5 18 0.00047 0.033 15.1 0.5 1 23 293 316 293 316 0.96 6 18 0.0011 0.079 13.9 1.1 1 23 320 342 320 342 0.98 7 18 0.0053 0.37 11.8 3.1 1 23 348 371 348 371 0.94 8 18 8.9e-05 0.0062 17.4 0.7 1 23 374 396 374 396 0.98 9 18 0.00022 0.016 16.1 0.9 2 23 439 461 439 461 0.97 10 18 0.027 1.9 9.6 2.8 1 23 467 489 467 489 0.98 11 18 0.09 6.3 7.9 2.1 2 23 496 518 495 518 0.92 12 18 0.00085 0.059 14.3 1.9 1 23 524 547 524 547 0.97 13 18 0.0001 0.0073 17.2 3.7 1 23 554 576 554 576 0.98 14 18 0.00032 0.022 15.7 2.5 1 23 582 604 582 604 0.98 15 18 0.012 0.83 10.7 0.2 1 23 610 632 610 632 0.97 16 18 0.15 11 7.2 4.7 2 23 638 660 637 660 0.89 17 18 2.1e-06 0.00015 22.5 2.7 1 23 666 688 666 688 0.99 18 18 0.0011 0.074 14.0 0.1 1 21 694 714 694 715 0.94
Sequence Information
- Coding Sequence
- atgacgACGAACACAGATTCAACTTttgaaaatgcaattaaaattcctATAAAAACTGAAATTCCAACATCCACAGATAACTtaggATGTATCAATAACGAAGCAATCGTATGTGAAGAAAAGCATAATGTAGCTGTAATGGAAAATGAAAACACAGTTCTTCTTGTAGACAACACAACCACCATTAACAACGaggcattaattaaaaatttaaacgattGTAACGGATTGGAGCCGACAGGTTTACACGATGATTTATTACAAACTGATAGGGACGTTTTTGATCCATTATCGTTATACGAATGGTACGAATGTGAATTGTGCGATTACAAGAGTTCAATAAAAGGAGACTTTTTCGATCACATATTAAAACACCCAAACGAGAAAGAATACGAGTGTAACATATGcggatttaaaagtaaaatagaaTTATCTTTACAGGCACATGTGGTAATGAGTCATGAAGTTACTTCATTTAGAGCGGTAGATCAAGTTCCTGATTGTAACGTAATAAGTGAGTTGAAAGAAGATGGAAGCTTGGAAGTTGGTATTGCGGATACTCAAGCAACTCAAGAGAACAATTGTGACGATATTATTGTAGAAAAACCTTTTGAAAACAGTTGTAATACAAATGGAAATTCTTTATTAGCAGTAGAAAGTACAAATAGCAATCAAAACTATTGGCGTACAGTTAATACTGAAGAATCGCATTTTAAATGCTATGGATGTGATTACACTTGTGTCGGCCTCTCTTATTTAAAGCTGCATATTatgaaagtacataaaaaagaatttaaatgtaacctTTGTAacgaaaaattttcaactacaaATGATTACATAGTTCACATAAATACACATATTGAAGAAAGGCCGTTTACATGTAACGAATGTGATTACGTTTGTGTAGGCCTCTCCTACTTGAAGCTGCATATTATGGAAGTACATGAAAAGGAATTTAAATGTAACGTTTGTAACGATaagttttcaaacaaaattgattACACAGTTCATATAAGTAACCACACTGAAGAAAAGCCTTTTAAGTGCACTACTTGTGATTACACTTGTATAGATAACGCCTGCTTAAATTTGCATATTACAGAAGAACATAAAAAATTTCAGTGTAACATGTGTGATGTTAAGTTTTCAACTGAAAATGATTACACAGTTCATTTGGAAAGACATACTGAACAGAAtaggtttaatattttaaaagtgtttaaaaatgaattgaattataacatttttgatcAATCGACTGAAAATGAAAGCACAGTTCCTACGAGACATAATCCTAGACAAAAGTGGCGTAAATGCCAAAtgtgtgataattttttttcaggccGCTCGTTATTAAAAGCTCATATTAAAAAAGTACATGCAGATCGAACTAAATTCAGTTGTAGTCTGTGCGATATGAAAATGACTACTCGCAATCGTTTCAGAGCTCATATGAAGAGACATTCTAAACAGAAGCTTATGAAATGCGATGTATGCAATTTTGTTTGTGTAGGTCGCAGTCATTTAGCAGTACATAATATGCAAAAACATAACGACAACAAGGATCATAAATGTGATATTTGTAATATAAAGTTTGAAAACCAAAATGCTTATAGAAATCACAACATGACAGAACATCGTCCTAAAAAAGCTCCATTTAAATGCACCATTTGTAAAACTTCTTATACAACCAAAAGAACTTTCTCGGTTCACATGAATCAACATAGTACCGATAAACGCTACAAGTGTAAGTTGTGTGATTTCACTTGTATAGGCAACTCAAACTTTATGACTCACATGGAAGTTCATGAAGAAGAAAGGAAATTTGAATGTACCATTTGTGGCGATAAGTTTTTAACTAAATATAGTTTAGGAGATCACATCAGAGCGCATGAAGGTAAGACGGTTAAATGCGACCTTTGTGATAATGTCTTTACAAATCTTAGACATTTAGTAACTCATTGCCACACAGAacataaagtaagaaaaacaTATAAGTGTGATGTTTGTGGTGCTGTATTCAAATACCACAAGTTGTTAAAATCTCACATGAGAAGACACACTGCAGAAAGTCCCTTTAAATGCAACATTTGTAATAAAGATTTTGGTGCTCAAGGCGGCTTAACACGTCATGAAAAATTATGCACAAATTCCAGTATGTCAATAGAAGTGCTATTACCAAACTGA
- Protein Sequence
- MTTNTDSTFENAIKIPIKTEIPTSTDNLGCINNEAIVCEEKHNVAVMENENTVLLVDNTTTINNEALIKNLNDCNGLEPTGLHDDLLQTDRDVFDPLSLYEWYECELCDYKSSIKGDFFDHILKHPNEKEYECNICGFKSKIELSLQAHVVMSHEVTSFRAVDQVPDCNVISELKEDGSLEVGIADTQATQENNCDDIIVEKPFENSCNTNGNSLLAVESTNSNQNYWRTVNTEESHFKCYGCDYTCVGLSYLKLHIMKVHKKEFKCNLCNEKFSTTNDYIVHINTHIEERPFTCNECDYVCVGLSYLKLHIMEVHEKEFKCNVCNDKFSNKIDYTVHISNHTEEKPFKCTTCDYTCIDNACLNLHITEEHKKFQCNMCDVKFSTENDYTVHLERHTEQNRFNILKVFKNELNYNIFDQSTENESTVPTRHNPRQKWRKCQMCDNFFSGRSLLKAHIKKVHADRTKFSCSLCDMKMTTRNRFRAHMKRHSKQKLMKCDVCNFVCVGRSHLAVHNMQKHNDNKDHKCDICNIKFENQNAYRNHNMTEHRPKKAPFKCTICKTSYTTKRTFSVHMNQHSTDKRYKCKLCDFTCIGNSNFMTHMEVHEEERKFECTICGDKFLTKYSLGDHIRAHEGKTVKCDLCDNVFTNLRHLVTHCHTEHKVRKTYKCDVCGAVFKYHKLLKSHMRRHTAESPFKCNICNKDFGAQGGLTRHEKLCTNSSMSIEVLLPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -