Mser013373.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:9402418-9404705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00016 0.011 16.6 1.1 1 23 267 289 267 289 0.97 2 12 0.023 1.6 9.8 0.2 1 23 291 314 291 314 0.95 3 12 5.6e-07 3.9e-05 24.3 1.7 2 23 383 404 382 404 0.97 4 12 0.0008 0.056 14.4 0.2 1 23 410 432 410 432 0.97 5 12 0.00032 0.023 15.6 1.4 2 23 439 460 438 460 0.97 6 12 1.3e-05 0.00094 20.0 1.7 1 23 466 488 466 488 0.98 7 12 0.00018 0.013 16.4 0.8 1 23 494 516 494 516 0.98 8 12 1.2e-07 8.1e-06 26.5 1.7 1 23 524 546 524 546 0.98 9 12 0.0025 0.17 12.8 0.2 1 23 552 574 552 574 0.96 10 12 7.6e-06 0.00053 20.8 1.0 1 23 580 602 580 602 0.98 11 12 0.00032 0.023 15.6 0.6 1 23 608 630 608 630 0.98 12 12 1.4e-06 0.0001 23.0 0.4 1 23 636 658 636 658 0.98
Sequence Information
- Coding Sequence
- atggcgaatGATAGCAGTGCGAGATATTCAGATTTATGTCGGCTCTGTGCAACAAAAACAAATATGGAAGAAGactacaatatttttgaaaacgaaGGACCAATTagagaaataaacaaaaaaatcgaaacttGTCTTCCCATACAGataCACGAAACAGACGAATTGCCAAAAATGATATGCCAGTATTGCTTTTACAAGCTCGAATTATGTTGTGAATTCCGCGAACGAGCAGTACGtacagaaaatattttaattaacttatttaAAGAATTGCTATCGTCTAAAATTAGCAGCGAACAACACTTAAATATTGCGAACATCGAAAGTCAAGATATGATTATGATACAACATCACCCATTATTAAACGAACACGAGTTACAAAACGTAACAGAAATCGATTTGTCACAACTTCAACATGACGATGTAATTTTAACTAATCAAAACGTTGATATTAGTGAACATTCTTTAGTAAACATCGATTTAAACCAAGAACTTAGTCAAGACTTATCGAATCAAGACACTATATTAGTAGCTGATACAAATGGTGTTCAATATCCAACAGATAACTTGCAACTCATACCGCAAGAACATCAGTTGTTAACTGGAGAATATCGACTTCAGTTAAGTGACTCGGTTAATGAACATGAACATAAAGGTGAAAAAGTTACGGAAAGTGTAAGAAACGGTGTTTTGCACACGAGTTTTTCTAGTATCGATAAATGTAATAATCATAACGAAAGCAAATTAGTTATCGAAGAATGTGAAATTAAGTTTGGATCTAATAACGTGGATTGgtttaattgtaatatttgTGCACGTAATTTTAGTGATAAAAGTGAATTTGAGTTACACTAtaatcaacatttttttaaatgtgttctATGTTTGGCAGTATTTACTAATGAAGATGCTCTTAGTCTACATAAAAAGGAAATGCATACATCggatattgaagaaaataagCCTGTGAAAACAAGGCTTAAGCGAGCAACTATGCCAATTAAATCAGAAGTGGATGAAAGCGATAACGAAAGCTTGagcaattttgaaaacttgGAAGAAGAGGAGGAAGAAGAAGAGGACGATCCCGAAACAGATCAACAAGAGTCGCCAACACAAAAACGTAGGAAATGGACACCAAAGGAATGCAAAGAATGTGGAAAAACATACAAAACAAACTATAAACTTGCAGAACATATGAGAAAACACACGGGCGAAAAACCATTCAAGTGTGGTTCATGTGAAAAAGCTTTTAGGTCTAAAATTGGTTTAGCTCAACACGAAGCAAAACATACAGGTCAGTATGATTTGTCTTGCCCAACGTGTGGTAAAGGATTTCAGTGTAAGAGTTATTTAATGGTTCATCAAAGGGTACATTCAGATGTAAAACCGTATCCTTGTACTACTTGTGggagaaattttaaaacgaaacaGTCATTGCTCGATCACACTAATAGGCATTTAGGAGTTAAACCGTACATGTGTGATATTTGTGGTCGCGGTTTTATAACAAAAGgaTTATGTAAGGCACATCAAAAAGTACATACAGGTTTAGATAATAGAAAATAttcttgtaaaatttgtaataagaTGTTCGTATCCAAAAGTTACTTACAAACTCATTTACGtattcatacaggtgaaaagccattTATGTgtgagGTTTGTGGTAAAGGTTTTCTAACTAGGGTAGACTTACGAATTCATTCCACTATGCATACTGGAGAAAAATCGTACGTTTGCGAAATATGTGGAAAGGCTTTTGCACGCAGGGATGCTTTGAGATGTCATCGGAGATCCCATACAGGAGAACGACCGTATAGTTGTGACCAATGTGGACAAACTTTTACACAATTTTCACCTATGGCTATACATAAAAGACTTCACACGGGCGAAAGACCTTACCCTTGCGAAGTTTGTGGAAAAGCTTTCGTATCACGATCTACTATGACttctcatttaaaaaaacatgattCTAGATAa
- Protein Sequence
- MANDSSARYSDLCRLCATKTNMEEDYNIFENEGPIREINKKIETCLPIQIHETDELPKMICQYCFYKLELCCEFRERAVRTENILINLFKELLSSKISSEQHLNIANIESQDMIMIQHHPLLNEHELQNVTEIDLSQLQHDDVILTNQNVDISEHSLVNIDLNQELSQDLSNQDTILVADTNGVQYPTDNLQLIPQEHQLLTGEYRLQLSDSVNEHEHKGEKVTESVRNGVLHTSFSSIDKCNNHNESKLVIEECEIKFGSNNVDWFNCNICARNFSDKSEFELHYNQHFFKCVLCLAVFTNEDALSLHKKEMHTSDIEENKPVKTRLKRATMPIKSEVDESDNESLSNFENLEEEEEEEEDDPETDQQESPTQKRRKWTPKECKECGKTYKTNYKLAEHMRKHTGEKPFKCGSCEKAFRSKIGLAQHEAKHTGQYDLSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCKAHQKVHTGLDNRKYSCKICNKMFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSYVCEICGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYPCEVCGKAFVSRSTMTSHLKKHDSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00950100;
- 90% Identity
- iTF_00950100;
- 80% Identity
- -