Mser013410.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004602.1:9770388-9776535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 1.6 1.1e+02 4.0 1.3 3 20 64 81 62 84 0.93 2 33 4.9 3.4e+02 2.5 2.0 1 21 89 109 89 111 0.76 3 33 0.5 35 5.6 0.8 1 23 117 139 117 139 0.98 4 33 0.079 5.5 8.1 1.3 1 23 145 167 145 167 0.97 5 33 2.7e-05 0.0019 19.0 3.8 1 23 172 194 172 195 0.96 6 33 0.074 5.2 8.2 4.2 1 23 206 229 206 229 0.96 7 33 0.00017 0.012 16.5 0.4 3 23 239 260 238 260 0.96 8 33 0.01 0.7 10.9 3.3 1 20 320 339 320 342 0.95 9 33 0.19 13 6.9 0.5 1 23 347 369 347 369 0.91 10 33 2 1.4e+02 3.7 1.3 1 23 375 396 375 396 0.95 11 33 0.00093 0.065 14.2 5.3 1 23 429 452 429 452 0.96 12 33 0.00046 0.032 15.2 4.1 1 23 463 486 463 486 0.96 13 33 0.00039 0.028 15.4 1.4 3 23 496 516 494 516 0.97 14 33 3.7 2.6e+02 2.9 0.5 2 22 563 582 562 584 0.83 15 33 0.11 8 7.6 1.3 3 20 589 606 587 609 0.93 16 33 0.029 2 9.5 0.4 1 23 614 636 614 636 0.96 17 33 0.27 19 6.5 0.7 1 23 642 664 642 664 0.98 18 33 2.5 1.8e+02 3.4 2.2 1 14 670 683 670 692 0.74 19 33 0.00012 0.0085 17.0 2.3 1 23 697 720 697 720 0.96 20 33 0.00021 0.014 16.3 3.2 1 23 731 754 731 754 0.97 21 33 7.1e-05 0.005 17.7 1.5 2 23 763 784 762 784 0.96 22 33 0.0023 0.16 13.0 2.6 1 21 789 809 789 810 0.96 23 33 0.00058 0.04 14.8 2.4 2 23 863 884 862 884 0.97 24 33 0.012 0.83 10.7 0.5 1 23 904 926 904 926 0.98 25 33 4.9 3.4e+02 2.5 4.0 1 23 930 952 930 952 0.82 26 33 0.069 4.8 8.3 2.0 1 23 958 981 958 981 0.98 27 33 0.0053 0.37 11.8 1.5 1 23 987 1009 987 1009 0.97 28 33 0.00024 0.017 16.0 1.0 1 23 1015 1038 1015 1038 0.97 29 33 3.6e-05 0.0025 18.6 1.3 2 23 1050 1071 1049 1071 0.97 30 33 3.2e-05 0.0022 18.8 0.8 3 23 1086 1106 1084 1106 0.96 31 33 1.6e-05 0.0011 19.7 1.4 1 23 1112 1134 1112 1134 0.98 32 33 1.2e-05 0.00084 20.1 1.1 1 23 1140 1162 1140 1162 0.98 33 33 0.46 32 5.7 0.3 1 21 1168 1188 1168 1189 0.92
Sequence Information
- Coding Sequence
- ATGGATACTCAGCGGTTTcgGGTTGATTTTGAAGGCCAATTAGCATTTTATTCTAATGATGATTCTACAGTATGTGAAGATCCTTTAAACCCAAGAACAGGGGAATATAAAACAGGCGATTACTGCGGAACATCTATAATAAAGCAACAGCTCAAAAAACATGTCGCAGATTATCACGGCTATTATGGTTGCGGCGTTTGTGCATACACTTTTTCTACCGAACAAAGATTAGCCAAGCATAAAGAATGTCACGAAAATAACCCCTTTCCTTGCACCAATTGTAGTTTAAGCTTTAAGAAAGCTCTCGATTGTGCCTATCACTCCAGGCTTCattatacttttaatttctACAAGTGCCCTTTATGTACTTTTGGGACTAAACTTAGAATTACTATAAAACTACATATTCAAAAACACGAAAATGACTTCAATTTTCAGTGTAGTTTCTGCTCAAAGAGATTTTTAACAAAAGCGTATTGGATCGAACACGAACAGTCTCATTCGGGAGCTCGTTTCGAATGtgatatttgtaaaaaaacttttgtataCAAGCGATATTTACAAGATCACATTAAATATcatcataataaaaataaaaaaggtggtGATAAAGTATACATTTGTCATTTCTGTAATAAACAATATAATTGGCAAAAGGATCTTACAAAACATTTATATAGAAGCCATAAGATAAGGCAAGAGTTAAATGAAGATTGCAGAATTTGTGGCAAAATGTTTGCCACATCTCAAGGTTTAAGACTTCACATTACGAGATCTCATGCTAGTGGAACTGAAGATCATACATATTGTAAAACTCACGATAGTAGAAGGggcgattttaattgtgaaTGTGAAGATCCTTTAAAAGCACGTAAACGTGAAGTACTATGTGACTACTGTGGAGTATATGTAAAGAAGCACAAGCTCAAAAGCCATGTTGCAGATTATCACGGCGAATATAGTTGCGACGTTTGTGTGTACACTTTTTCAACCGAAGAACATTTAGCCAAGCATAAAGAATGTCACGAAAATAACCCTTTTCCTTGCACCAATTGTAGTTTAAGCTTTAAAACCGCCCTAGAGTATGGCTTACATTCTAAGCTGCATTCTACTTCCAAGATTTACAAGTGCCCTTTATGTACTTTTGAGACTAAACTTAGTTATATAAAACTACACATTCAAAAACACTCAAACGAGTTCAATTTTCAGTGTAGCGTGTGCGCTGAaagatttttaacaaaaacgtgTTGTATGGAACACGAAGAGTCTCATTCTGGTTCTCAATTCGAAtgtgatatttgcaaaaaaacctTTAGGTTCAAGCGATACTTACACGAACACCGTAAACTTAATCATAAAAAAGTTTTGGAAGGTGTCGACGCAGTACACGAGTGTAATTTgtgtaataaacaattttctttaaaaaaaaatcttgtaaGACATAAACAAAAACTTCATAATATAGGGAAAGATTTAAGATGTTTGTGTACCATTTGTGGCAAAATACTTGCCGAATCTTACACTTTGAAAATGCACATGAAAACTCATGGTAATTTTAGTGAGCCATTTAGTTGTGAAATTTGTAGTAAGAGGGTTGATTTTGAAGACCATCAATTAGCATTTTATTCTAATGGTGATTCTACAGTATGTGAAGATCCTTTAAACGCAAGAACAGGGGAATATAAAACATGCGATTACTGCGGAGCATCTATAGAAAAGCAAAAGCTAAGAAAACATGTCACAGATTATCACGGCTATTATGGTTGCGACGTTTGTGCGTACACTTTTTCTACCAAACAAAGTTTAGCCGAGCATAAAGAATGTCACGAAAATAACCCTTTTCCTTGCCCCAACTGCAGTTTAAGCTTTAAAAAAGCTCTCGATTATGCCTATCACTCCAGGCTTCATTATACTTTTAAATTCTACAAGTGCCCTTTATGTACATTTGCGACTAAACTTAGAATTACTATAAGGCTACACATTCAAAAACACGAAAACGACTTCAATTTTCAGTGTAGTTTGtgcccaaaaaaatttttaacaaaagtatATTGTATCGAACACGAAGAGTCTCATTCTGGAGCTCGTTTCGAATGtgatatttgtaaaaaatcatttatttacaAGCGATACTTGTTAACTCACCGCAAActtaatcataaaaaaatattggaaggTGTCGATAAATTGCACGAGTGTAATTTGTGTAATAAACagttttctttacaaaaaacacttataaaacatcaaaataaaattcataagatAGGGAAAGATCGGAGTTGTAAGTGTACCATTTGTGGCAAAAAACTTGCCGAacctttcaatttaaaaatgcacaTGAAAATTCATGGCATTAAACCTTATAGTTGTGAAGTTTGTGGTGAGAAGTTTATGAAAAAATCTGATTACAACAGCCATCatCGACATAGTTTAATTGTTATGATATTGGTAAGTCCATCCACATTTAGTCGAGTACAGGGCGCTTCAAATTCCTTggCATTAAATAGAGTAAAAAGGGAAGTACACGATAATTTTGAAGTACTTTCGTTTAGTTCAAAacgaaaaagagaaaaacacaTGTGGACTTGTCGTAAATGCGATGCAACTTTTAGTACCTCGAGAAGATTACGCGATCATCGAAAGACACATAGAAAAGAAGAGAGCGACGCGCAATACGAATATAAATACGACGACGTTAAAGATAATTACGTTTGCTTTACTTGCGATATCGAGTGTTCGACTAAAAAGGAAATTGAAGACCACATTTTGGTCCACGCGGAAAAATTTAAATGCGAAGTTTGTGATAAGTATTTCTTAAAACCGTACGAGTATTCGTGTCATATGTACAACCACGATAAATCCAAAGGCTTTCAGTGTCCTTTTTGTAAGCACGAAACTAACAGAAGAACCGCCATATCGATTCACATAAACACTTACCACTTAAGAAAGTTTATTTACACGTGCGAATTGTGCGGAAAAGGCTTTAACGATTGTTTACTGTACAAAGAGCACAATAATATCCACGAAGGCATTAAGCCATTTCAATGCGTCGTTTGTTCGAAAGATTTTGCTTTTTCGAGTTATTTAACGACTCATCAAATTCGTAACCACCGCGTTATGATCGAAGGGGTAATCGGCACAAATCAGTGTTACGTGTGTTACAGAAGTTTTACTCGTGCCAATACTTTAGAAAAACACATGTTACGACAtcaaaattttggagaaaaaagaGTTCACGAGAAAAAACACTTGTGCGATATTTGTGGAAAAGGTTTTGCTCGAACAGAGAAACTTCGTATACATTATAGGGTTCATACGGGAGTTAAGCCATACACATGTTCTTATTGCGCAAagagttttacaaaaaaagattatttgATAATGCACGAACGAGTTCATAGTGGTGAAAAGCCGTATTCTTGCGAGTATTGCggaaaatgttttaatcaaGGTGCGCCTTTAAGGTTACACATTAGAAGTCATACAGGTGAAAGGCCGTATATTTGCCATTTGTGTAATTCTGGTTTTATTTCCAGAGGCGTATTGAACTTGCATTTTAAAAGCTGCCCCGGAAGTTCAATGTAA
- Protein Sequence
- MDTQRFRVDFEGQLAFYSNDDSTVCEDPLNPRTGEYKTGDYCGTSIIKQQLKKHVADYHGYYGCGVCAYTFSTEQRLAKHKECHENNPFPCTNCSLSFKKALDCAYHSRLHYTFNFYKCPLCTFGTKLRITIKLHIQKHENDFNFQCSFCSKRFLTKAYWIEHEQSHSGARFECDICKKTFVYKRYLQDHIKYHHNKNKKGGDKVYICHFCNKQYNWQKDLTKHLYRSHKIRQELNEDCRICGKMFATSQGLRLHITRSHASGTEDHTYCKTHDSRRGDFNCECEDPLKARKREVLCDYCGVYVKKHKLKSHVADYHGEYSCDVCVYTFSTEEHLAKHKECHENNPFPCTNCSLSFKTALEYGLHSKLHSTSKIYKCPLCTFETKLSYIKLHIQKHSNEFNFQCSVCAERFLTKTCCMEHEESHSGSQFECDICKKTFRFKRYLHEHRKLNHKKVLEGVDAVHECNLCNKQFSLKKNLVRHKQKLHNIGKDLRCLCTICGKILAESYTLKMHMKTHGNFSEPFSCEICSKRVDFEDHQLAFYSNGDSTVCEDPLNARTGEYKTCDYCGASIEKQKLRKHVTDYHGYYGCDVCAYTFSTKQSLAEHKECHENNPFPCPNCSLSFKKALDYAYHSRLHYTFKFYKCPLCTFATKLRITIRLHIQKHENDFNFQCSLCPKKFLTKVYCIEHEESHSGARFECDICKKSFIYKRYLLTHRKLNHKKILEGVDKLHECNLCNKQFSLQKTLIKHQNKIHKIGKDRSCKCTICGKKLAEPFNLKMHMKIHGIKPYSCEVCGEKFMKKSDYNSHHRHSLIVMILVSPSTFSRVQGASNSLALNRVKREVHDNFEVLSFSSKRKREKHMWTCRKCDATFSTSRRLRDHRKTHRKEESDAQYEYKYDDVKDNYVCFTCDIECSTKKEIEDHILVHAEKFKCEVCDKYFLKPYEYSCHMYNHDKSKGFQCPFCKHETNRRTAISIHINTYHLRKFIYTCELCGKGFNDCLLYKEHNNIHEGIKPFQCVVCSKDFAFSSYLTTHQIRNHRVMIEGVIGTNQCYVCYRSFTRANTLEKHMLRHQNFGEKRVHEKKHLCDICGKGFARTEKLRIHYRVHTGVKPYTCSYCAKSFTKKDYLIMHERVHSGEKPYSCEYCGKCFNQGAPLRLHIRSHTGERPYICHLCNSGFISRGVLNLHFKSCPGSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -