Mser000780.1
Basic Information
- Insect
- Malthinus seriepunctatus
- Gene Symbol
- -
- Assembly
- GCA_963924605.1
- Location
- OZ004600.1:12043078-12060864[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.4e-05 0.00099 19.9 2.1 2 23 8 29 7 30 0.95 2 30 0.0096 0.67 11.0 0.5 1 23 36 59 36 59 0.95 3 30 1.5 1.1e+02 4.1 8.7 1 23 125 147 125 147 0.98 4 30 0.078 5.5 8.1 1.7 1 23 165 188 165 188 0.93 5 30 0.052 3.7 8.7 0.3 2 23 195 216 194 216 0.96 6 30 7.9e-05 0.0055 17.6 2.0 1 23 223 245 223 245 0.98 7 30 3.7 2.6e+02 2.9 0.1 2 20 252 270 251 273 0.89 8 30 0.044 3.1 8.9 2.2 1 23 280 302 280 302 0.96 9 30 0.00034 0.024 15.6 0.8 1 23 308 330 308 330 0.98 10 30 0.0077 0.54 11.3 1.5 1 23 336 359 336 359 0.97 11 30 0.0052 0.37 11.8 0.9 1 23 365 387 365 387 0.98 12 30 2.3 1.6e+02 3.5 7.4 1 23 460 482 460 482 0.99 13 30 0.00028 0.02 15.8 4.5 1 23 487 509 487 509 0.98 14 30 0.15 11 7.2 2.8 1 23 515 538 515 538 0.95 15 30 3.8e-05 0.0027 18.5 2.0 1 23 544 566 544 566 0.98 16 30 0.00028 0.019 15.8 2.7 2 23 573 594 572 594 0.97 17 30 0.19 13 6.9 3.6 1 23 600 622 600 622 0.97 18 30 0.00036 0.025 15.5 0.5 2 23 629 651 629 651 0.95 19 30 0.0061 0.43 11.6 4.7 1 23 657 680 657 680 0.96 20 30 0.076 5.3 8.2 3.7 1 23 686 708 686 708 0.97 21 30 9.3e-05 0.0065 17.3 0.7 1 23 714 736 714 736 0.99 22 30 0.38 27 6.0 3.6 1 23 965 988 965 988 0.96 23 30 0.044 3.1 8.9 1.7 1 23 994 1016 994 1016 0.98 24 30 0.00072 0.05 14.5 3.0 1 23 1022 1044 1022 1044 0.98 25 30 0.53 37 5.5 7.4 2 23 1051 1072 1050 1072 0.95 26 30 0.00014 0.01 16.7 1.6 2 23 1079 1100 1078 1101 0.94 27 30 8.5e-05 0.0059 17.5 1.8 1 23 1107 1130 1107 1130 0.98 28 30 0.026 1.8 9.7 6.0 1 23 1136 1158 1136 1158 0.97 29 30 0.00056 0.039 14.9 2.0 1 23 1164 1186 1164 1186 0.98 30 30 0.0022 0.15 13.0 0.2 1 23 1192 1215 1192 1215 0.97
Sequence Information
- Coding Sequence
- ATGCACGAAAAAACCTTAGTTCAATGTGAAATATGtggaaatacatttaaaaacaaaaaatacttaGAAAATCATATTAAACAACATCACACTAGTGACAAACCATTCAAGTGTGCTATTTGCGATTACACTTGTATCAGTAAAGGCATTTTAAAGCAGCACATCAATGCCATTCATGTGCAAGACATAAATTTAACAACAGAAGAAAACTTAAATTCAGACCCAAGTATTAAAATCGAATATCATGATATAATTGAAGACAATTCCAAGAAACTGGACACATCGATTGATCAATATAAATCTCTTAGTGACAATAGCCCGTTAGAAAATGCCGATGATAAAAAATTACCtgaggaaaaagttaaaaaatcattCCAGTGCAAAATGTGCGATTTTAATACACATCATAAACACTACCTCCCTAAACACATGAAAATTCATTCTGAAGCATACAAGCTAAAACCTCGTCGTCGGAGTCGAAGTATTCAAACGTTCTCCTGTGATTTGTGcgattataaaacaaattttaatgcctacttatttaaacacaaaattcTAACTCATTCTGAAGGAGGACCTTTGTCGTGCAATTCTTGTGATTATAAAGCGGAAAGTAAGGAGCAATGGAAAGCGCATGTTCAAACGCATTTATCtgcttctaaaaaattttcctgtgATTTGTGCGATTATAAAACGCGACGTAATGAACACTTAATTAATCACATTCTAACTCATTCTGAAGGAAGACTTTTGCCGTGTAAGTCTTGTGATTACAAAGCTGAAAGCAAGGAGCAATGGGAAGCTCATGTTCCAACTCATAAtgttcctaaaaaattattccaatGCAATAAGTGCGATTATAGTACATATAATAAACGCTACTTTCCTATACACATGGAAAATCATTCTGAAGAGAAACCTTTCTCTTGTAATTTGTGTGATTACAAAGCTAAACGAGAAGAGCAATTGAAATCTCATATTCTAACTCATACtgcttctaaaaatttttcttgcgacTTGTGCGAttttaaaaccataaaaaatatcaacttaaCTAGACACAAAAAAGTAACTCATTCTGATGTAAGACCTTTCTCTTGTTATTCTTGTGGTTATAAAGCTAAGCTGAAAGAGACGTTGATAAATCATATTCGAACTCATAGTGCTCCAAAGGTGCAAGACGTAAATTTAACTACAGATGAAAAGCCCGATCTAGACACAACTATTAAAATAGAATATGACGAATTAAATGAAGAGAATAACAAGAAATTTGCCACAGCGTTTGATGAATCTAAACACGTCGTTCACAAAGAACATTTAGAAAGTGCCaatgataaaaatttcaaaagttcaaaaaatgcaaaagttcaaaaaatgttcCAGTGCGAAATGTGCAGCTTTAATACACATAAAAAACACTATTTCTCCATACACATAAAAACTCACGAAGGAAGTACTTACTCTTGTAAGTCTTGTGATTACAAAACTAAAAACCAAGGACATTTAAAAACCCATATTCGAAATCATAATAGTGATCAAACGTTTTCCTGTGATTTGTGCGATTATAAAACACATCTTAAAGACtacttaaataaacacaaaaaggGAGCTCATTCTAATGAAAGGCCTTTTCCTTGTAATTCTTGTGATTACAAATCTAAGACCAAGAGTCAATTGAAAAAACATATTGAGACTCatagtggtttaaaaaatatttcatgtgATTTATGTGATTATAAGTGTTCCTCAAAATTCACTTTAAAAGATCACATGCGAATTCATAGCCAAGAAGTTGAATTTTCTTGTTCTCTTTGTGaatataaaacttttcaaaaacagTCTTTTAGATACCATGTGAACACCCATGGTGAAACTTCAGGAGCCCAATGTGAAATATGTGGAAATACGTTTAAAAGCAAAGCACGTTTAAAAGACCATATTTTACAATATCACACCATTGAAAAACCATTTAAGTGTGCTATTTGTGATTATAGCTGTATcgataaacattttttacaaaagcaTAATCGTCAAATCCACTTACGTGAGAGAAAGTTTAGCTGTGAattttgtgattataaatgttttgGAAGAAATGGATTAACTCAGCATCGTAGGATTCATACCAGAGAGAAACCGTTTAAATGTAACGTGTGCGATTACAAAACAGCAATAAAAGGTGGGCTTAGAACTCATATGCGAactcatactggtgaaaaaccattttcTTGTGAATTTTGTGGCTACAGGGCTGCTTTTAAACCAAATgTGCAAGATATACATTTACGAACTTTATATGCAGACGAAAATTCTGATCTACACACAACTATTAAAATAGAAGATTATGAAATAATTGAGGAAAACACGGATGTTGACACATCGCTTGATGATTGTCCATCTCTTATTGACAAAGGACGGTCAGAAAATGCAGATGATTCTACACTAACAACAATTGATCACAAGACAATAACTCATTCTGACGCTAGACTATTCTATTGTTATTCTTGCGATTACACAGCTAAAAGCAAAGTTGAAGACATAAATATAACTACAGAAGAAAATATAGCTTTATACTCGAGTATTACAATAGAATATAACGAAATAAGTGAGGAGGATGTCAAAAAATTCCACATGCCGCTTGAACAGTGTAATTCTGTGATTGGCAAAGAACAGTTAAAAACTGCAGATGataaaaatgtgcaagaaaaaaatttcactacaTATGAAAATTCGGAATTACACACATCGAGCATTAAAATTGAATATCATGATATAAGTGAAgaaaatgataataaattagACCCATCTTTTGACGAATGTAAGCGTCTTATCGACAAAGAGCAATCAGAAAAAAACACAGATAAAAAAGTACCATCCAAAGTTCAAAAAACATATGAGTGTGAAATGTGCGGTTATAAAACAGAAAATAGAAGGTGCATCTATAAGCACAAGAAGGTGACACACTCTGAAGCTAGACCATTCTCTTGTTATTCGTGTAATTACAAAGCTAAAACCAAAGGACGATTGCAAACTCACATTGAAACTCACAGTGGTTTAAAACGATTCTCATGTGACttgtgcgattataaatgttccaCAAACTACACTTTAAAAGGTCACATGGAAAGTCACACTCGAGAAGTTGAACTTCACTGTTCTCTTTGCAATTATAAGACCTTTCAAACGCATTCATTTAAAAAGCATATGAAAATACACGATCAAACTTTACTAGTCCAATGTGAAATATGcggaaatacatttaaaaataaaacatcttTAGCAACTCACACTCTACAACATCACACCAGTGACAAGCCATTTAAGTGTAACGTTTGTGATTACACTTGcattattaaaagttacttaaGTAGACATATTCGTGTTGTTCATTTACAAGAGAAAAAGTTCAGTTGTGAattttgcgattataaatgttttaataaaacttcATTTGTTCGCCATCGTAGAATTCATACTGGAGAGAAACCGTTTAAATGTAATGTGTGCGATTACGAATCGTTAAATCCAAATCATCTTACAAACCACATGCGAACACATACTGGCGAAAAGCCTTATGCTTGTGATTATTGCGGGTATAGAGTTTCTTGGAAACCAAATTTAAAGCTTCACATGCAGCGCATCCATTCTAATGAAATGCTCATCAGTTGTAAGAAAGTGTAA
- Protein Sequence
- MHEKTLVQCEICGNTFKNKKYLENHIKQHHTSDKPFKCAICDYTCISKGILKQHINAIHVQDINLTTEENLNSDPSIKIEYHDIIEDNSKKLDTSIDQYKSLSDNSPLENADDKKLPEEKVKKSFQCKMCDFNTHHKHYLPKHMKIHSEAYKLKPRRRSRSIQTFSCDLCDYKTNFNAYLFKHKILTHSEGGPLSCNSCDYKAESKEQWKAHVQTHLSASKKFSCDLCDYKTRRNEHLINHILTHSEGRLLPCKSCDYKAESKEQWEAHVPTHNVPKKLFQCNKCDYSTYNKRYFPIHMENHSEEKPFSCNLCDYKAKREEQLKSHILTHTASKNFSCDLCDFKTIKNINLTRHKKVTHSDVRPFSCYSCGYKAKLKETLINHIRTHSAPKVQDVNLTTDEKPDLDTTIKIEYDELNEENNKKFATAFDESKHVVHKEHLESANDKNFKSSKNAKVQKMFQCEMCSFNTHKKHYFSIHIKTHEGSTYSCKSCDYKTKNQGHLKTHIRNHNSDQTFSCDLCDYKTHLKDYLNKHKKGAHSNERPFPCNSCDYKSKTKSQLKKHIETHSGLKNISCDLCDYKCSSKFTLKDHMRIHSQEVEFSCSLCEYKTFQKQSFRYHVNTHGETSGAQCEICGNTFKSKARLKDHILQYHTIEKPFKCAICDYSCIDKHFLQKHNRQIHLRERKFSCEFCDYKCFGRNGLTQHRRIHTREKPFKCNVCDYKTAIKGGLRTHMRTHTGEKPFSCEFCGYRAAFKPNVQDIHLRTLYADENSDLHTTIKIEDYEIIEENTDVDTSLDDCPSLIDKGRSENADDSTLTTIDHKTITHSDARLFYCYSCDYTAKSKVEDINITTEENIALYSSITIEYNEISEEDVKKFHMPLEQCNSVIGKEQLKTADDKNVQEKNFTTYENSELHTSSIKIEYHDISEENDNKLDPSFDECKRLIDKEQSEKNTDKKVPSKVQKTYECEMCGYKTENRRCIYKHKKVTHSEARPFSCYSCNYKAKTKGRLQTHIETHSGLKRFSCDLCDYKCSTNYTLKGHMESHTREVELHCSLCNYKTFQTHSFKKHMKIHDQTLLVQCEICGNTFKNKTSLATHTLQHHTSDKPFKCNVCDYTCIIKSYLSRHIRVVHLQEKKFSCEFCDYKCFNKTSFVRHRRIHTGEKPFKCNVCDYESLNPNHLTNHMRTHTGEKPYACDYCGYRVSWKPNLKLHMQRIHSNEMLISCKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -